Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i02
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 43 4e-05
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 31 0.16
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 29 0.84
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 1.1
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 1.9
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 2.6
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 27 3.4
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 27 3.4
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 3.4
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 26 4.5
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 5.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 7.9
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 25 7.9
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +2
Query: 398 MSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGATIGRYANIIRDAT 577
+ V I +YGA + +++ GF+ Y NP+FGATIGR+AN I +
Sbjct: 378 LEVSIANYGALVQAVRYKGRNLVN-----GFNDFSRYKLKENPFFGATIGRFANRIANGQ 432
Query: 578 MVVRPSGRMYMLSNNK 625
V G +Y L N+
Sbjct: 433 FEV--DGHLYTLCKNE 446
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 485 GFDTLEEYFQPRNPYFGATIGRYANIIRDATMVVRPSG 598
GFD L +YF RN Y + +N ++DA ++ PSG
Sbjct: 560 GFDILYDYFVKRNRY--GVLHSKSNSVKDAYIIPMPSG 595
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 28.7 bits (61), Expect = 0.84
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 586 HHHCGIPNDVCVAPNSSSEIWVSWLEIFF*SVESCDHIIRNAFFVRN 446
+HHCGI CV N SE ++ + +S +H I + FF N
Sbjct: 209 NHHCGIYRSNCVVINKDSE-FLQMCRPINTTQDSNEHSIGSLFFYLN 254
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = +2
Query: 98 FPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAF 277
+P+++ + + EE+T+ V + + K P +E + D K K K T+
Sbjct: 204 YPIQLVVTREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTETE 263
Query: 278 EESKQ----MLKEIKVTNEEAKSPCSSSTN 355
E +K +VT EE S S TN
Sbjct: 264 ELNKTKPIWTRNPSEVTKEEYASFYKSLTN 293
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 200 VELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKE 304
+E ++D F + + +K+P+ NA E K +LKE
Sbjct: 384 IERLLDSFPAIFQDVKIPEPVVGNALEVVKLLLKE 418
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 170 TPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSS 346
TP PEP ++E + +G + KN S + S +L K+ N +K S
Sbjct: 245 TPTPEPSDKNLEKLKNGASKQASESQSLKNMESLSLARSSPILTSEKLKNGASKQAIES 303
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 104 VKMAEEGDEKASGDVEEDTKTVTPQPEP 187
+K A EGDEK G V++ + +P P
Sbjct: 260 IKFAGEGDEKPDGTVQDIQFVLAEKPHP 287
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 491 RILRPHHQERLFCQE 447
R+LR HQERL CQE
Sbjct: 307 RLLRYDHQERLTCQE 321
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 285 DSSKAFEVRFLGTFIDLGINPNPSTINSTSGI 190
D S++F++ FLG D G + P SGI
Sbjct: 69 DKSQSFDIAFLGAPFDTGTSYRPGARFGPSGI 100
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 421 IRNYLNTHPIFRSPSVPSNHFN 356
IRN++ THP ++ SV ++ N
Sbjct: 624 IRNFITTHPSYKQDSVVNDEIN 645
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 119 EGDEKASGDVEEDTKTVTPQPEPK 190
+GDE+ DVEE +T++ +P K
Sbjct: 438 DGDEEVDIDVEETVETISEKPSKK 461
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 74 YISF*NSKFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMP 235
YI+ NS V A G +GD+E+ ++ + PE L+V GFG+ P
Sbjct: 102 YITIVNSLLVVCSAF-GSSVIAGDLEDVSRDLKVGPEVANLSCSLMVVGFGIGP 154
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 638 SGDGLCCLTACTFFPKAAPPLWHP 567
SG+ C + CT K AP W+P
Sbjct: 1120 SGEVECFMETCTPIAKPAPANWYP 1143
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +2
Query: 233 PKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSSSTNIEVV 367
P + PK+ T+N +S + + +V +E S TN ++
Sbjct: 347 PHGISSPKHSTNNLSSKSGKFHSDFRVVSENVLLQARSETNSPII 391
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +2
Query: 119 EGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESK--- 289
E EKA D+ + + V P+ E + VD F P + + + + E
Sbjct: 166 EKSEKAVADLNDSSTDVVPESEVSFQTISSRVDNFFAAPLPSEQAEELIEDDYAEQPEQA 225
Query: 290 --QMLKEIKVTNEEAK 331
Q +++ ++++EA+
Sbjct: 226 VGQPIEQQSISDDEAR 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,884
Number of Sequences: 5004
Number of extensions: 54014
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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