Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i02
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 65  FKYLSKI*GFSTIFEFFVLHY 3
           F +LS    F+TI +F V+HY
Sbjct: 279 FVFLSFAFIFATIIQFAVVHY 299


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 233 PKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKS 334
           P+   + +N    A  E   +LKEIK+  ++ KS
Sbjct: 475 PQVETILQNACFCARNELMMILKEIKIITDQLKS 508


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 378 LGERKIG*VFR*FRMEPRSPQSRFLTKKAFLMMW 479
           +G+R I    + FRME ++ ++  +    F++ W
Sbjct: 437 MGKRNIKAQVKRFRMETKAAKTLGIIVGGFILCW 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,618
Number of Sequences: 438
Number of extensions: 4191
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)