Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i01
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493...    28   1.3  
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    28   1.3  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           27   3.1  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    25   9.4  
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405...    25   9.4  

>12_01_0603 +
           4937472-4938351,4938597-4938689,4938820-4939589,
           4939706-4939809,4940026-4940548,4940697-4941074
          Length = 915

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   SLKLSDKLEGRKEMPLSGNFRREMF 76
           +L L DKL+ +K++PL+GN R+++F
Sbjct: 621 NLNLLDKLK-KKKLPLTGNARQQLF 644


>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 5   LKLSDKLEGRKEMPLSGNFRREMFVAMKNAKKTKENSEA 121
           +KLS  LEG  + P      ++   A KNAK T  + EA
Sbjct: 279 MKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEA 317


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 63   VAKCLWL*RMPKKRKKTA-KQIWLTMVKTIQQITMMKQTKQLPCLQNQLNRTNLPTL 230
            +A+CL+  ++P   +  + K +WL  + ++QQI    +     C+   L   NL T+
Sbjct: 838  LARCLYWEKLPSLGELVSLKHLWLECLPSLQQIGQSSEASSSNCVDLSL-PPNLDTM 893


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 129  LTMVKTIQQITMMKQTKQLPCLQNQLNRTNLPTLEPYLPKNLPKILSNLLKNE 287
            L ++K ++ +  M + K L   Q  L R   P+LE  L + LPK+  ++++N+
Sbjct: 1580 LPLLKALE-VRRMDELKILD--QEFLGRKGFPSLERLLLERLPKLEWSIVEND 1629


>05_07_0079 -
           27539389-27539892,27540059-27540343,27540453-27540550,
           27540951-27541042,27541155-27541259,27541360-27541567,
           27542469-27542472,27542742-27542765,27545025-27546266
          Length = 853

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 120 QIWLTMVKTIQQITMMKQTKQLPCLQNQLNRTNLP 224
           + W T+  + + I  +K+TK LPC  + L   + P
Sbjct: 532 RFWTTLQGSSKDIGWLKRTKTLPCSVDGLFSNHSP 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,329,594
Number of Sequences: 37544
Number of extensions: 83213
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)