Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h22
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   0.35 
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.82 
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    28   1.1  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   2.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   3.3  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   7.6  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    25   7.6  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 535 FYSWCYFRALCVYWITGFIYETFN 464
           ++SWCY+ A  V W  GF  +  N
Sbjct: 800 YHSWCYYVAALVLWSIGFALDEEN 823


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 2   TDEDRKSASAVGYVAFLTYSHVNILHVVFNQTYRTK*NTTSVTRMYKTCV 151
           T ED K+ +   ++   + + V++ H V N+T++TK NT  + + +   V
Sbjct: 28  TAEDEKAVTNKKHIN--SSATVHVFHGVVNRTFKTKGNTVGLPKSFSKAV 75


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 149 VWVLLFKIVLCYEAPPATLEAIHPKGLRVSVPDEGFSLFAFHGKLNEEMEGLEA--GHWS 322
           +W+L+F + L        L  +   G R +V D   S  A    L +E +G     G   
Sbjct: 89  IWILIFIVALICSVLIGVLGGV--LGHRTAVRDRHPSYKAKTYSLVKEYKGTTFFDGFDF 146

Query: 323 RDITKPKNGRWIFRDRNAALKVG 391
            +IT P +G   + DRN++ K+G
Sbjct: 147 MNITDPTHGFVQYLDRNSSAKLG 169


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 67  KHFTCCVQSNLPNQIEHNI 123
           K F  C   N PN+IEH I
Sbjct: 588 KSFPICTLKNFPNRIEHTI 606


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 122 SVTRMYKTCVWVLLFKIVLCYEAPPATLEAIHPKGLRVSVPDEGFSLF 265
           S+TR    C+ +L  K V+  +  P  +   HP   +V V D G S F
Sbjct: 804 SITRQLIQCLTLLNEKHVIHCDLKPENILLCHPFKSQVKVIDFGSSCF 851


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 381 SAAFRSLNIHLPFFGFVMS--LDQW 313
           SAA R++ +H+ F  F+ S  LD W
Sbjct: 48  SAAHRNMGVHISFVRFLRSTVLDSW 72


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 490 TGFIYETFNCPLPVILSVS*AVLYDKSPKVNLISDFQRSISISEYPSSVFWLR 332
           T F+Y+    PL  +LS    + Y     +NLI   Q+  SI +  + VF+ +
Sbjct: 279 TDFLYKKMAPPLLTLLSTDSEIQYVALRNINLI--LQKRPSIFDVKTRVFFCK 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,321
Number of Sequences: 5004
Number of extensions: 56070
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)