Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h19
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   1.3  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   3.9  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   6.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   9.0  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   9.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.0  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 368 SNPVYPFLFFGTEGSREQCPIYRS 297
           SN +Y FLF   E   EQ PIY S
Sbjct: 545 SNSIYFFLFAKDETVSEQAPIYNS 568


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 271 PMVPSMHTRLRYIGHCSLEPSVPKNRKGYTGFD 369
           PMVP+  T +RYI       S  K++K   G D
Sbjct: 49  PMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLD 81


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 151 FLIHLYNLWFLKASVTWF 98
           FLI L  +WF  A + WF
Sbjct: 393 FLISLLTVWFFPAGLFWF 410


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -1

Query: 427 VFLFLKCH*IIPLHLKMMEN--RIQYILSCFLVQK--APENNVQYTVVSY 290
           V  FL    IIPL L++MEN   +   ++ F+VQK    +  +QY   +Y
Sbjct: 146 VINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQTY 195


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +2

Query: 266 VFQWFLRCIRDYGILDIVLWSLLYQKTGKDILDSIFHHLQMKRNYLVAF*KQE 424
           VF+ +  CI ++   D+ + +LL +  G+ +L      LQM +++L A  K++
Sbjct: 560 VFECYKLCINEFTPFDLEVLALLLESCGRFLLRYPETKLQM-QSFLEAIQKKK 611


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 400 IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEHSFLY 254
           + PL  +  E+  Q ++ C L+        + + V    KE  EH F+Y
Sbjct: 56  VTPLEYRDGESWKQSVIYCDLIFAKENKEEKGSFVKAQLKEDAEHPFIY 104


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -1

Query: 520 LNALLLEPVSETLYPPVANRNTALFSCTCRSV-FLFLKCH*IIPLHLKMMENRIQYILSC 344
           L  ++LEP+            T    C  + + + +     + P  + +ME  +  I SC
Sbjct: 172 LPEVILEPLVMACQTNSTTLLTITLDCFAKLIDYNYFDSPTLNPSDITLMERVVNTIASC 231

Query: 343 FLVQKAPENNVQYTVV 296
           F  +  PE  VQ  +V
Sbjct: 232 FCGESTPE-RVQLQIV 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,910
Number of Sequences: 5004
Number of extensions: 46765
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)