Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23h19
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0127 - 1519803-1520036,1520802-1521095,1521840-1522614,152... 29 2.3
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140... 29 3.0
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 28 4.0
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112... 28 4.0
02_04_0142 + 20167876-20169108 28 5.2
09_02_0609 - 11197630-11197977,11198631-11198702 27 6.9
02_04_0103 - 19768288-19768737 27 6.9
02_01_0398 - 2899311-2899454,2900679-2900807,2900927-2900998,290... 27 6.9
04_03_0047 + 10118929-10119276 27 9.1
03_02_0372 + 7864015-7864065,7864167-7864208,7864292-7864322,786... 27 9.1
>10_01_0127 -
1519803-1520036,1520802-1521095,1521840-1522614,
1524574-1525412
Length = 713
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 353 DILDSIFHHLQMKRNYLVAF*KQEN*ATSTRKKCGISICYRGI 481
D++ + H+ ++N++ F N S K CG+ C RGI
Sbjct: 507 DMVLDLICHMSSQQNFITVFNDIGNITCSRNKTCGLIKCDRGI 549
>12_01_0190 -
1404374-1404402,1404491-1404558,1404830-1404967,
1405414-1405465,1405570-1405669,1406938-1407088,
1407212-1407311,1407471-1407585,1407786-1407950,
1408050-1408105,1408199-1408256
Length = 343
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 188 PAISSSKVRASIISDTSLQSVVFESFRDLVF 96
PA++ + A ++ TSL S + ESF+ ++F
Sbjct: 59 PAVTEAAEPAEVVPRTSLASTIAESFKQMLF 89
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 188 PAISSSKVRASIISDTSLQSVVFESFRDLVF 96
PA + + A I+ TSL S + ESF+ ++F
Sbjct: 83 PAATEAAEPAEIVPRTSLASTIAESFKQMIF 113
>09_03_0130 -
12609417-12610462,12610786-12611040,12611139-12611253,
12611376-12611428,12611854-12612114,12612252-12612302,
12612412-12612660,12612779-12613007,12613292-12613666
Length = 877
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 365 NPVYPFLFFGTEGSREQCPIYRSLVCIEG 279
NPVY +LFF T G + + ++CI G
Sbjct: 361 NPVYIYLFFQTNGIKAWSALGGCVLCITG 389
>02_04_0142 + 20167876-20169108
Length = 410
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +1
Query: 97 KTKSRKLSKTTDCKDVS--EIIEALTLDEEMAGKSTRQPSRXXXXXXXXXXXXHNKESCV 270
K + L + T C+ V E++E + L ++ ++ + + + + C+
Sbjct: 170 KRMTEILGRGTACQVVEHPELLEGMRLSGKLKEEARKHLNSKHLHYEEMCSYHNRNKMCL 229
Query: 271 PMVPSMHTRLRYIGHCSLEPSVPKNRKGYTGFDFPSSSDEEE 396
P++ LR + S E KN GY DF DE+E
Sbjct: 230 FDDPALQKSLR-LALRSGEEHAKKNPFGYDDEDFSDDDDEDE 270
>09_02_0609 - 11197630-11197977,11198631-11198702
Length = 139
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 85 KCPPKTKSRKLSKTTDCKDVSEIIEALTLDEEMAGK 192
+ PP RK + DC S +I L + E++GK
Sbjct: 43 RAPPHADDRKNDDSGDCDGDSGVIAILPVSREVSGK 78
>02_04_0103 - 19768288-19768737
Length = 149
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +1
Query: 271 PMVPSMHTRLRYIGHCSLEPSVPKNRKGYTGFDFPSSSDEEELSSGILKTRKLSDKYKKK 450
P+ P+ H R + EPS P+ +G+ D P K +K K KKK
Sbjct: 67 PLPPTWHAREDVAAAATWEPSPPRGGRGW--IDGPMREKRRRKRKRKRKKKKKKKKKKKK 124
>02_01_0398 -
2899311-2899454,2900679-2900807,2900927-2900998,
2901667-2901790,2901835-2901882,2902145-2902197,
2902932-2903030,2903141-2903539
Length = 355
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 82 KKCPPKTKSRKLSKTTDCKDVSEIIEALTLDE 177
KK +SRKL++ DC +S I +A LD+
Sbjct: 314 KKLDGFLESRKLNEGLDCDTISRICQAYDLDK 345
>04_03_0047 + 10118929-10119276
Length = 115
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 520 LNALLLEPVSETLYPPVANRNTALFSCTCRSVFLFLKCH*IIP 392
L +LLL P+++ PP + +TA+ + + CH +P
Sbjct: 40 LRSLLLPPLADADPPPPSRESTAITTSVVVAAIFLSSCHQPLP 82
>03_02_0372 +
7864015-7864065,7864167-7864208,7864292-7864322,
7864472-7864653
Length = 101
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 338 GTEGSREQCPIYRSLVCIEG 279
GT G++E+CP Y +L +G
Sbjct: 77 GTSGNKEECPCYNNLKSSQG 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,276
Number of Sequences: 37544
Number of extensions: 266315
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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