Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h19
         (523 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060644-1|AAL28192.1|  275|Drosophila melanogaster GH07456p pro...    29   2.9  
AJ133650-1|CAB38635.1|  275|Drosophila melanogaster RNA polymera...    29   2.9  
AE014134-2412|AAF53342.1|  275|Drosophila melanogaster CG7885-PA...    29   2.9  
AY061470-1|AAL29018.1|  574|Drosophila melanogaster LD43674p pro...    29   3.8  
AL109630-3|CAB65872.1|  975|Drosophila melanogaster EG:BACR7A4.1...    29   3.8  
AE014298-122|AAF45563.1|  975|Drosophila melanogaster CG3711-PA,...    29   3.8  
AE014297-4306|AAF56845.2|  574|Drosophila melanogaster CG1420-PA...    29   3.8  
AE014297-3352|AAF56159.2|  350|Drosophila melanogaster CG16710-P...    29   5.1  
AE014296-789|AAF47858.1| 1716|Drosophila melanogaster CG1308-PA ...    29   5.1  

>AY060644-1|AAL28192.1|  275|Drosophila melanogaster GH07456p
           protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 400 IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEH 266
           +IPL    +  R+QY   C  +   PE +V++T+    S+E   H
Sbjct: 70  LIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRH 114


>AJ133650-1|CAB38635.1|  275|Drosophila melanogaster RNA polymerase
           II p33 subunit protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 400 IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEH 266
           +IPL    +  R+QY   C  +   PE +V++T+    S+E   H
Sbjct: 70  LIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRH 114


>AE014134-2412|AAF53342.1|  275|Drosophila melanogaster CG7885-PA,
           isoform A protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 400 IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEH 266
           +IPL    +  R+QY   C  +   PE +V++T+    S+E   H
Sbjct: 70  LIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRH 114


>AY061470-1|AAL29018.1|  574|Drosophila melanogaster LD43674p
           protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 328 PSVPKNRKGYTGFDFPSSSDEEELSSGILKTRKLSDKYKKK 450
           P  P +         PSSS+EEE+     KT+K S K +KK
Sbjct: 464 PERPTSEVDSASSSEPSSSEEEEVKPEKKKTKKKSKKREKK 504


>AL109630-3|CAB65872.1|  975|Drosophila melanogaster EG:BACR7A4.19
           protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 427 VFLFLKCH*IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEHSFLYYV 248
           + L L+ H +IP H  ++ +R  Y    F     P+N V   +   +      HS L Y+
Sbjct: 803 ISLVLEDH-VIPAHKSVLSSRCTYFQGMFRSFMPPDNTVNIQIGEISPSLEAFHSLLRYI 861


>AE014298-122|AAF45563.1|  975|Drosophila melanogaster CG3711-PA,
           isoform A protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 427 VFLFLKCH*IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEHSFLYYV 248
           + L L+ H +IP H  ++ +R  Y    F     P+N V   +   +      HS L Y+
Sbjct: 803 ISLVLEDH-VIPAHKSVLSSRCTYFQGMFRSFMPPDNTVNIQIGEISPSLEAFHSLLRYI 861


>AE014297-4306|AAF56845.2|  574|Drosophila melanogaster CG1420-PA
           protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 328 PSVPKNRKGYTGFDFPSSSDEEELSSGILKTRKLSDKYKKK 450
           P  P +         PSSS+EEE+     KT+K S K +KK
Sbjct: 464 PERPTSEVDSASSSEPSSSEEEEVKPEKKKTKKKSKKREKK 504


>AE014297-3352|AAF56159.2|  350|Drosophila melanogaster CG16710-PA
           protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 520 LNALLLEPVSETLYPPVANRNTALFSCTCRSVFLFLKCH*IIPLHLKMMENR 365
           L+  LL  ++E+ YPP       +    C S+  FLK H + P    + E+R
Sbjct: 14  LHTQLLMYLAESEYPPCNLDEKCISLARCTSLLPFLKPHNMTPAEKAVFEDR 65


>AE014296-789|AAF47858.1| 1716|Drosophila melanogaster CG1308-PA
            protein.
          Length = 1716

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 403  SGILKTRKLSDKYKKKVRYFDLLPGDIMFP 492
            SG+L T ++  KYK+ +R +D      MFP
Sbjct: 1161 SGLLATSRVHQKYKQVLRLYDQTTEQSMFP 1190


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,341,775
Number of Sequences: 53049
Number of extensions: 474019
Number of successful extensions: 1382
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)