Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h19
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    32   0.22 
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    31   0.66 
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    31   0.66 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    31   0.66 
AF016666-7|AAB66087.1|  196|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL110484-4|CAB54396.2|  425|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical ...    29   1.5  
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 280  PSMHTRLRYIGHCSLEPSVPKNRKGYTGF-DFPSSSDEEELSSGILK 417
            P   T + Y  H S  PSV ++ +  T F   P++SDEEE+  G LK
Sbjct: 4618 PLRRTSITYTSHFS--PSVIRDLRSSTSFTSVPAASDEEEIVKGKLK 4662


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 107  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 18
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8632 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8661


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 107  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 18
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 107  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 18
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681


>AF016666-7|AAB66087.1|  196|Caenorhabditis elegans Hypothetical
           protein B0281.1 protein.
          Length = 196

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +1

Query: 382 SDEEELSSGILKTRKLSDKYKKKVR 456
           S+ E+L + +LKT+KL +K ++KVR
Sbjct: 91  SELEKLKTSLLKTKKLQEKLERKVR 115


>AL110484-4|CAB54396.2|  425|Caenorhabditis elegans Hypothetical
           protein Y38E10A.5 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 520 LNALLLEPVSETLYPPVANRNTALFSCTCRSVFLFLKCH 404
           ++ LLL  +SE  YPPV      L +  C  +F+ +  H
Sbjct: 10  VSLLLLLTISEASYPPVCTSGFTLINGKCLRIFVDVSTH 48


>AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical
           protein W10D9.3 protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = -2

Query: 369 IESSISFPVFWYRRLQRTMSNIP*SRMHRRNHWNTAFFIMWRFKFFHFKLRRSR 208
           +++S+ F V   R++++   ++   + +  N WN   F+M   KF +++  RS+
Sbjct: 124 LDNSMDFFVEIQRKMKKFDKSVSLEKKYMENDWNCFDFVMEYMKFTNYRNYRSK 177


>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
            F21H12.6 protein.
          Length = 1374

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 394  PLHLKMMENRIQYILSCFLVQKAPEN 317
            P HL +++NR++ ++   LV + PEN
Sbjct: 1111 PDHLPLLQNRVKQLMQAKLVDQTPEN 1136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,322,135
Number of Sequences: 27780
Number of extensions: 256170
Number of successful extensions: 772
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)