Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h17
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   7.1  
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    25   7.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.3  

>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 476 RKQILRSQRGYFLAHPLDEKSKFQIHN-FPTSPF 574
           R  +L +  GY +  PL+  ++ QIHN F T+ F
Sbjct: 42  RIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVF 75


>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 509 SNPSDSSKFVSVICWKTKISSQKN 438
           +NPSD+ KF   IC   ++SSQK+
Sbjct: 49  TNPSDARKFQMAIC---RLSSQKS 69


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 476 RKQILRSQRGYFLAHPLDEKSKFQIHN-FPTSPF 574
           R  +L +  GY +  PL+  ++ QIHN F T+ F
Sbjct: 42  RIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVF 75


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 212 QDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKY--EAAASERM 346
           Q+ LG S     NC +  ++C E    RH   D C +  E  A E M
Sbjct: 137 QEILGCSHYMR-NCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENM 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,274
Number of Sequences: 5004
Number of extensions: 45886
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)