Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h17
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    30   1.6  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   2.8  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   2.8  
AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    28   4.9  

>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 362 NFKFNPSFLRQQLHICKHPFSRDDIASSRH 273
           N  +N  F+   L +C+ PF +DD+ +  H
Sbjct: 338 NETYNEHFILNHLEMCETPFDKDDLKNREH 367


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 164 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKYEAAASER 343
           CK ++QC  +   VCG D     + + + C L    C E+K     K   C    +  E+
Sbjct: 317 CKCSEQCTMNSAHVCGTD----GKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEK 372

Query: 344 MD 349
           M+
Sbjct: 373 ME 374


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 164 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKYEAAASER 343
           CK ++QC  +   VCG D     + + + C L    C E+K     K   C    +  E+
Sbjct: 325 CKCSEQCTMNSAHVCGTD----GKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEK 380

Query: 344 MD 349
           M+
Sbjct: 381 ME 382


>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
           protein Y52D5A.1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 464 SNKLRKQILRSQRGYFLAHPLDEKSKFQIHNFPTSPFRQPH 586
           + ++ K++   ++    A P+D KSK  +   P  P+R  H
Sbjct: 760 TERVYKKLREKKKSTAKAKPIDAKSKLLLDRVPKKPYRLKH 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,615
Number of Sequences: 27780
Number of extensions: 253368
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)