Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h16
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.70 
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    28   1.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.1  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    27   2.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   3.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   5.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   5.0  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   5.0  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   5.0  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   6.5  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   6.5  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   6.5  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   8.7  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.7  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   8.7  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.7  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   8.7  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 273 EGSDDAESLLEDYHGHSPDASSPLDYKYEEDIKYGKTESL 392
           E  +DAE + +D    SP  SSP         KY + E+L
Sbjct: 47  ESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKYVRKEAL 86


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
 Frame = +3

Query: 333 SSPLDYKYEEDI----KYGKTESLEREAEVETWKKSKGRRRVVIDSQDTHDTEFDNELEA 500
           S  L+  YE++     K  +  SL         +K    RRV  + ++  D E DN++E 
Sbjct: 90  SRTLESSYEDETETANKLSRVSSLVSVIRQTIDRKKSLERRVREEQEEKTDNEDDNDVEI 149

Query: 501 DFGRRRPNQNYFQRNPKTKSWNYREDNI 584
                  N    ++   T S    ED+I
Sbjct: 150 STQESLENNGLAEKKDDTSSLATLEDDI 177


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
 Frame = +3

Query: 261 ETGDEGSDDAESLLEDYHGHSPDASSPLDYKYEEDIKYGKTESLEREAEVETWKK--SKG 434
           +TGD  S+  +++L      SP  S P D++ E     G   +L  + E E  +K   + 
Sbjct: 637 DTGDIKSESIDAVLPTLETSSPSLSIPTDFQKEASPNKG-AAALSSKVEPEVVEKLLDEE 695

Query: 435 RRRVVI--DSQDTHDTEFDNELEADFGRRRPNQNYFQRNPK 551
              ++I    ++     F +EL         NQ  F++  K
Sbjct: 696 EEEMIIRMAEEEKEYDRFVSELNQRHETEEWNQEAFEKRLK 736


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 348 YKYEEDIKYGKTESLEREAEVETWKKSKGRRRVVIDSQDTHDTEFDNEL 494
           Y + +DI   K E+ + EA  +  K+ K  +    D +D++DT+ D ++
Sbjct: 163 YGFSDDIMKRKLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKI 211


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 252 PQYETGDEGSDDAESLLEDYHGHSPDASSPLDYKYEEDIKYGKTESLERE 401
           P+Y   D  SD A++   D   H P  S     + +       T SLE E
Sbjct: 25  PEYTNQDPNSDQADNENSDAKAHQPQHSPQHSTENQGHTGTSDTSSLEME 74


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 225  FSDYSGAKMPQYETGDEGSDDAESLLEDYHGHSPDASSPLDYKYEEDIKYGKTESLER 398
            +SD   A +     GD+  D A+ +LE   GHS   +S  +   +E++   K ++ ER
Sbjct: 1362 YSDEGVATLEPGAQGDDVVDKAKMILEKMEGHSQLLTSSAN--PDEEVLRAKLKAAER 1417


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 345 DYKYEEDIK--YGKTESLEREAEVETWKKSKGRRRVVIDSQDTHDTEFDNELEADFGRRR 518
           D K + +I   Y +   L+RE+ + T KK+K +    +D +    T+   E EA+   + 
Sbjct: 36  DVKKQPEIALLYKQYYELKRESSI-TPKKAKTK----VDFKFQTPTKQRAETEANESPKA 90

Query: 519 PNQNYFQRNPKT 554
           P  +Y Q  PKT
Sbjct: 91  PRNDYLQVTPKT 102


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 378 KTESLEREAEVETWKKSKGRRRVVIDSQDTHDTEFDNELEADFG 509
           +T       E ++ + +  RRR+  ++ D  + EFD E    FG
Sbjct: 12  ETNKKRNPEEADSLEPASSRRRLAEENSDEENEEFDEEGGRFFG 55


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 181 SANAIRPPPNVPPARR 134
           +AN  RPPP  PP+RR
Sbjct: 305 AANKKRPPPPPPPSRR 320


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 285 DAESLLE---DYHGHSPDASSPLDYKYEEDIKYGKTESLEREAEVETWKKSKGRR 440
           D++ L+E   +Y  + P+ +  L+ +Y + I     E ++ + E E W    G+R
Sbjct: 313 DSKKLVEMYLNYQENEPEKALELEKRYGKRIIDRLVEQVKNDEEAEKWVLLNGQR 367


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 167 PPSPKCAPCTSPELSPS*YGGHDSILLCKNCGIFYNGNYEFD 42
           P    C  CT+ ++    Y     + LC NCG  +  N+E D
Sbjct: 78  PSKHLCFICTTEKIKREDY----ELTLCANCGYLFCCNHESD 115


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 536 SAQSKNEELELSRRQHSCFTKVN 604
           S  SKNE + L+  + +C+TK N
Sbjct: 45  SVSSKNERMVLNEERQNCWTKRN 67


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 258 YETGDEGSDDAESLLEDYHGHSPDASSPLDYKYEEDIKYGKTESLEREAE 407
           YE   E S   E+++  Y GHS       DY+ EE   Y   +  E + +
Sbjct: 585 YENEVESSS-GENIVSMYTGHSDLNDDDDDYQDEESYSYASDDDDESDED 633


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 270 DEGSDDAESLLEDYHGHSPDASSPLDYKYEEDIKYGKTESLEREA 404
           +EG +  E LL+  H  +  ASS  D  ++   K+ K   L  E+
Sbjct: 26  NEGVEQNEKLLQLLHIRAKSASSCSDLLFKSFSKFNKHHPLNEES 70


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 240 GAKMPQYETGDEGSDDAESL 299
           GAK PQ  T DEG ++ E++
Sbjct: 34  GAKAPQVNTIDEGDENLEAI 53


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 370 NMVKQKVWKEKPKSKHGK 423
           N +K  VWKE  K KH K
Sbjct: 596 NSLKSSVWKELLKEKHWK 613


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 480 FDNELEADFGRRRPNQNYFQRNPKTKSWNYREDNIAALRKSMR 608
           F  +LE D     P    F+     ++W+ R+D++  LR+ +R
Sbjct: 269 FSKQLEQDSASMLPA---FEGRETEQNWSVRQDSVLRLRQYLR 308


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 423 KSKGRRRVVIDSQDTHDTEFDNELEADFGRRRPNQNYFQ 539
           KSKG     IDS   +  E+  E+E D  R  P+   +Q
Sbjct: 238 KSKGFYAKNIDSVINNRCEYSEEIEKDLTRSLPDYPAYQ 276


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 6   DNLQVVVSNSPNVKFVVPVVEY 71
           D LQ  ++N P V+F+ PV  Y
Sbjct: 54  DELQRRINNDPKVRFLPPVDSY 75


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 201 STPVPIPAPTPSALP 157
           + PVP PAP P+A P
Sbjct: 393 AVPVPPPAPAPAAAP 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,899
Number of Sequences: 5004
Number of extensions: 46818
Number of successful extensions: 237
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)