Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h15
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  

>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 244 FGLMSPSMGFPSRRPDLIPAAGHGRHSG 161
           + +  P+     ++P+L+ A   G H+G
Sbjct: 104 YNVAVPTKSILEKKPELVDATDPGEHNG 131


>AF388659-2|AAK71994.1|  463|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform B
          protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 61 ISTEQKKKN*YENVTGK*ST 2
          I+ +Q+KKN  EN+ G  ST
Sbjct: 5  INMDQEKKNNVENLKGGGST 24


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -3

Query: 302 LVTRLNNGRFPTAARSAWAVRSHVAVNGL 216
           ++  +NN R    + S + +R  +  NG+
Sbjct: 808 ILWNMNNKRLDPKSDSRYTIREEILANGV 836


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,006
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)