Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23h11
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 73 1e-13
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 46 2e-05
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 46 2e-05
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 45 4e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 44 9e-05
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 44 9e-05
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 44 9e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 44 9e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 44 9e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 44 1e-04
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 40 0.001
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 40 0.001
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 40 0.002
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 40 0.002
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 36 0.024
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 34 0.097
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.13
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 33 0.13
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 33 0.13
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.13
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.13
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 33 0.13
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.17
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 32 0.39
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 32 0.39
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 32 0.39
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 32 0.39
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 32 0.39
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 32 0.39
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 32 0.39
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 31 0.52
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 31 0.69
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 31 0.69
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 0.69
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 31 0.69
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 31 0.69
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 31 0.69
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 31 0.69
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 30 1.6
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 29 2.8
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 28 4.8
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 4.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.4
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 28 6.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 6.4
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 8.4
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
ENP PS+CLGVF LS YTTE+ + +F ++G ++K +V D +G SRGF F+YF +E
Sbjct: 70 ENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIE 128
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FV F
Sbjct: 43 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FV F
Sbjct: 63 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FV F
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 508 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
TTE+++ + FS G ++ V++V D +TGR RGF F+ F +
Sbjct: 16 TTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAE 55
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +1
Query: 508 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
T E + +F KYG V +VQVVID KTG +GF V F
Sbjct: 290 TKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 511 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
TEQQ+ F KYG + + K G+ RGF FV F D
Sbjct: 15 TEQQLRKFFEKYGQISDASLKY-TKEGKFRGFAFVGFLD 52
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 463 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FV F
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 463 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FV F
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 463 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FV F
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 508 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
TTE + + FS+ G V V++V D +TGR RGF FV F +
Sbjct: 15 TTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTE 54
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 442 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
++ L R L + ++ T + + FS G V V+++ D++TGRS+G C+V F
Sbjct: 14 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 73
Query: 622 EDME 633
D E
Sbjct: 74 WDEE 77
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 442 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
++ L R L + ++ T + + FS G V V+++ D++TGRS+G C+V F
Sbjct: 159 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
Query: 622 EDME 633
D E
Sbjct: 219 WDEE 222
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 511 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
TE++I + F+ G V+ V++V D +TGR RGF FV F +
Sbjct: 18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSE 56
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 493 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
GLS +E + +FS+YG V + ++ D TG+S+GF F+ ++D
Sbjct: 44 GLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKD 88
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +1
Query: 460 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
N R + V +S +E I IFSK G V +++V D +TG+ +G+ F+ F D++
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQ 70
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 493 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
GLS TT + + F ++G V++ V+ D T R+RGF F+ F D
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVD 95
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 466 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
T ++ + + GLS +T + + F YG V+ ++ D T R RGF FV F+ E
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE 186
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 493 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
GLS TT + + F ++G V++ V+ D T R+RGF F+ F D
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVD 95
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 466 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
T ++ + + GLS +T + + F YG V+ ++ D T R RGF FV F+ E
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE 186
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
V G+S + ++ F++YG V + QV D GRSRGF FV F
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 35.5 bits (78), Expect = 0.032
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
V GL +EQ + F ++G VD ++ D +T R F F+ FE+ E
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEE 162
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
V G+S + ++ F++YG V + QV D GRSRGF FV F
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 35.5 bits (78), Expect = 0.032
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
V GL +EQ + F ++G VD ++ D +T R F F+ FE+ E
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEE 162
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 469 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+ F++
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 469 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+ F++
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 469 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+ F++
Sbjct: 170 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 222
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 508 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
T + Q+ H F +YG + V + D TG RGF + F+ +
Sbjct: 36 TGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKD 77
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 436 GDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 615
GD+ P S L + GL T + + + SKYG + + ++D T +G+ FV
Sbjct: 68 GDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFV 127
Query: 616 YFE 624
FE
Sbjct: 128 DFE 130
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
V L TE + FS + GPV+ V++V D TG+ +GF FV F+
Sbjct: 250 VGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFK 296
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 33.9 bits (74), Expect = 0.097
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 463 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDM 630
P +R L + L T +++ IF K+G V +++V T +RG FV +ED+
Sbjct: 15 PEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRV---GNTAETRGTAFVVYEDI 67
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +1
Query: 496 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
LS + + + F+K+G V + +V+ D +T +S+G+ FV F + +
Sbjct: 142 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQ 187
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 481 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
L + LS TT + F +YG + V + D + +S+GF FV F
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 481 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
L + LS TT + F +YG + V + D + +S+GF FV F
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
E+++ IF KYG + V D K+GR F FV FED
Sbjct: 22 EKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFED 55
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 627
E+++ IF KYG + V D K+GR F FV FED
Sbjct: 22 EKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFED 55
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 511 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
+++ + F KY K +VV +++T +S+G+ FV F D E
Sbjct: 215 SDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSE 255
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 535 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
FS +G + +V++D + GRS+GF FV FE E
Sbjct: 363 FSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPE 394
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 535 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
FS +G + +V++D + GRS+GF FV FE E
Sbjct: 363 FSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPE 394
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 511 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
TE ++ FS+YG + + + +D +TG +G+ V +E
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYE 104
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E +F KYG V ++ D T S+G CFV F
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E +F KYG V ++ D T S+G CFV F
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E +F KYG V ++ D T S+G CFV F
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E +F KYG V ++ D T S+G CFV F
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E +F KYG V ++ D T S+G CFV F
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E +F KYG V ++ D T S+G CFV F
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E +F KYG V ++ D T S+G CFV F
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 457 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 621
E+ T + + + LS T E+ I SK+G +D + +G S+G FV+F
Sbjct: 257 ESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHF 311
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 535 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
F YG + +V+ D + GRS+GF FV FE E
Sbjct: 337 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPE 368
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 535 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
F YG + +V+ D + GRS+GF FV FE E
Sbjct: 277 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPE 308
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 535 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
F YG + +V+ D + GRS+GF FV FE E
Sbjct: 274 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPE 305
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 535 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 633
F YG + +V+ D + GRS+GF FV FE E
Sbjct: 337 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPE 368
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
V +S E + F +GP+ + + D TG + F FV +E
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
V +S E + F +GP+ + + D TG + F FV +E
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 487 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
V +S E + F +GP+ + + D TG + F FV +E
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 511 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
T+ ++ +FSK+G V V+ V K G+ +G FV F+
Sbjct: 695 TDDELKALFSKFGTVTSVRRVTH-KDGKPKGIAFVDFD 731
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 185 SREPLRVLERLLSRSDIAMFLVNK--RDKSEISRIFSINTLKRSTSIYRRDRTLKTQIEK 12
SR L VLE+ LS +F+V K DK+E F + + + + R + L+ ++EK
Sbjct: 154 SRSRLHVLEKELSAKANDIFMVTKDLHDKNEELTSFRMEYVTKLSEANREKKALEEKLEK 213
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 496 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
LS + + + H FS +G V++ ++D K GR G V FE
Sbjct: 196 LSPTVSNEMLYHAFSHFGDVERAVHIVDEK-GRPTGEGIVEFE 237
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 496 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 624
LS + + + H FS +G V++ ++D K GR G V FE
Sbjct: 196 LSPTVSNEMLYHAFSHFGDVERAVHIVDEK-GRPTGEGIVEFE 237
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKV-QVVIDAKTGRSRGFCFVYFEDME 633
E+ + FS +G + +V +++ D +G S+GF F+ F E
Sbjct: 113 EKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFE 153
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 85 NIRDISLLSLLLTRNIAMSDRERSRSRTRNGSREPVPKPAVMSR 216
+I + SLLS+L ++A RE SR+ +RN S +P + + R
Sbjct: 89 DIDNTSLLSILKLSHVA---RESSRNTSRNNSPQPAGRETELKR 129
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 514 EQQINHIFSKYGPVDKV-QVVIDAKTGRSRGFCFVYFEDME 633
E+ + FS +G + +V +++ D +G S+GF F+ F E
Sbjct: 123 EKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFE 163
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 145 RERSRSRTRNGSREPVPKPAVMSR 216
R R++SR+R+ SRE P P SR
Sbjct: 1560 RSRTKSRSRSRSREAAPPPQQRSR 1583
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 145 RERSRSRTRNGSREPVPKPAVMSR 216
R R++SR+R+ SRE P P SR
Sbjct: 185 RSRTKSRSRSRSREAAPPPQQRSR 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,901
Number of Sequences: 27780
Number of extensions: 246449
Number of successful extensions: 720
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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