Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h09
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    29   0.53 
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    28   0.93 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   3.8  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   3.8  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.0  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   6.6  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   8.7  

>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 158 YFSVSYLIASFDNLEIILRCHALG*SHLYQYVSTTLT*NSHQIFWP 21
           +F+V+ L  +FDN EI     ALG   +Y YV T    ++    WP
Sbjct: 123 FFTVNGLTGTFDNYEIYASLMALG---VYPYVPTLTGFSTFLGVWP 165


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 209 IRPSCNTRDSGQNKPSFNFVNNEQEDKEADCEDVPILVERSKALHELIVS---KKKSPND 379
           ++ S    DS +N P    +N + +  E+D +D+PI   R+ +   +  S   K+     
Sbjct: 27  MKESDEESDSSENHPLSESLNKKSKS-ESDEDDIPIRKRRASSKKNMSNSSSKKRAKVMG 85

Query: 380 NNGLKQKNET 409
           N GLK   +T
Sbjct: 86  NGGLKNGKKT 95


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 180 YTFCSDKLLFSFIFDSFIRQFGD 112
           Y+F SD + +SF  DSFI++  D
Sbjct: 722 YSFLSDLVQYSFQPDSFIKEAAD 744


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 266 VNNEQEDKEADCEDVPILVERSKALHEL-IVSKKKSPNDNNGLKQKN 403
           VNN  E +  +  ++ I+   S +L E    S++K+ NDNNGL + N
Sbjct: 153 VNNSVEPQMENTANITIV---SPSLKESDFESEEKATNDNNGLIETN 196


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
 Frame = +2

Query: 197 LISDIRPSCNTRDSGQ--NKPSFNFVNNEQEDKEADCED------VPILVERSKALHELI 352
           L++D     N     Q  + P  N      E+KE+D +       + I    SK  HE  
Sbjct: 53  LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKN-HETS 111

Query: 353 VSKKKSPNDNNGLKQKNETE 412
           +S  KS  DNN  K  NE +
Sbjct: 112 LSPSKSTIDNNERKLDNEID 131


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 230 RDSGQNKPSFNFVNNEQEDKEADCEDVPILV-ERSKALHEL 349
           RD   N  +  F+NNE+E+ E +  +V + +  R+  L  L
Sbjct: 459 RDLNLNFENSEFLNNEEENDEDELSNVLVSIPSRTSVLERL 499


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 197 LISDIRPSCNTRDSGQNKPSFNFVNNEQEDKEADCEDV 310
           L+   + S +    G+N+PS NF N  ++D   + + V
Sbjct: 188 LLEGAQASIDKNRPGKNQPSLNFENISKKDLTEEFKQV 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,735
Number of Sequences: 5004
Number of extensions: 36899
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)