Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23h01
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0088 - 627825-628984,629339-629509,629612-630416                 31   0.62 
12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534     29   2.5  
09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    28   5.8  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    28   5.8  

>02_01_0088 - 627825-628984,629339-629509,629612-630416
          Length = 711

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 581 GWRCRSSPEFFSLSLCCSKLNVAACGSTNFINGH 480
           GW   S+  FF+LS   +KL V  C +  F+ G+
Sbjct: 82  GWVSTSTAPFFTLSSRANKLTVVGCNTLAFLGGY 115


>12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534
          Length = 277

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 613 QGYKLWIYEHKDGDVGLPQNF 551
           QG  LWIY ++DGDV    +F
Sbjct: 76  QGEGLWIYHYEDGDVAYENDF 96


>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 410 LSCWMIANCINHLMKFGKHIRYIHG 484
           L  +++  C+ H  +FGK +R +HG
Sbjct: 322 LPSFIVLKCLQHFKEFGKVVRPLHG 346


>04_04_1696 +
           35448667-35449641,35449726-35450562,35450667-35451001,
           35451371-35451497,35451594-35451752,35451872-35453053,
           35453164-35453424,35453513-35453761
          Length = 1374

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 666 ILPGILEDGKFKSSINTDKGTNCGYMSIRMEMSVFPRIFFFII 538
           ++  + E G   SS+N   G NC Y  + + + V+ R F  I+
Sbjct: 814 LVKAVDESGMSSSSVNEILGVNCLYQDLLIRLYVWDRRFHQIV 856


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,857
Number of Sequences: 37544
Number of extensions: 358965
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)