Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23g24
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...   111   7e-26
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    39   6e-04
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    29   0.62 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   4.4  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   4.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   4.4  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   5.8  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   7.7  

>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score =  111 bits (268), Expect = 7e-26
 Identities = 50/122 (40%), Positives = 77/122 (63%)
 Frame = +2

Query: 278 NTLDEPIKETFMRDLRAVGNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAER 457
           ++LDEPI+ T   + RA+G K  +VL P+    +L++WDLWGPL+   ++A  L  S ++
Sbjct: 55  DSLDEPIRVTLFNEFRAIGEKLVYVLYPKN-AQVLRDWDLWGPLIFSLVIALALALSTDK 113

Query: 458 ADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICR 637
            +  +     F  V  ++W G AV ++N KLLG NIS FQS+C+LGY  FP+ +A I+C 
Sbjct: 114 IERES----VFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCA 169

Query: 638 II 643
            +
Sbjct: 170 FV 171


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
 Frame = +2

Query: 254 SSGDNMEFNTLDEPIKETFMRDLRA----VGNKFYHVLIPREKTS--LLKEWDLWGPLLL 415
           S G    F+T   P + + + +L      +  K  HVL P +     ++ + D+ GP+L 
Sbjct: 42  SQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNPFKHVDVHIMDDTDMAGPILF 101

Query: 416 CTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG-NISFFQSVCVL 592
           C L +T L         S  G   F  ++ I  +G+  +    +L+   N+ F ++V VL
Sbjct: 102 CLLFSTFL---------SLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVL 152

Query: 593 GYCLFPVAL 619
           GY L P+ +
Sbjct: 153 GYSLLPLVV 161


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 166 HFNIIYLRIE*NVSLIVLLYFPNTSQNILYFQILPNTSNNSSL 38
           H   I L I  N+S+ + L +P + ++  Y ++  NTS  SSL
Sbjct: 139 HLKEIGLLIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSL 181


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 558 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 412
           PP++   +V+  A   P+ +   TS N   P+L  S L A P   VAI   R
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 281  TLDEPIKETF-MRDLRAVGNKFYHVLIPREKTSLLKEW----DLWGPLLLCTLMATILQG 445
            TL+  +K  F M D    G+K  HVL  R   S+L  W    DL  P +   L+  +L  
Sbjct: 1077 TLNMALKSEFDMTDFNNSGSKLMHVLHARIFISVLHLWRSADDLHLPYITRALLTNVLSN 1136

Query: 446  SAERAD 463
              +  D
Sbjct: 1137 CYQFED 1142


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 263 LHWM-ALGQVYSFPPQLLPHLPLDTCRISSQTYSFQYYLFTN*IKCESYSFTL 108
           LHW  ++G +      L  +  +  C   SQT   +  +FTN   C+++   L
Sbjct: 252 LHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 220 NYSHISRWIHVVFRVKRIHFNIIYLR 143
           +Y H S W+H+++   R  F    LR
Sbjct: 290 HYFHYSEWLHMIYGFLRAQFVFFLLR 315


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 19  YKKKSNPKTNYWKYLEVFGSKECFVMC 99
           Y K S  +  + KYL+ F ++ C+++C
Sbjct: 896 YLKGSCSRLEFRKYLQKFNNETCYMIC 922


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 676 KNRKVXCALNQYDAADDEREGHREQTVAENAHRLEE*NVSTQQFRVDSYNCSPDP 512
           K  K   A  Q D  + E + + E      +H +EE +VST  F+   Y  S DP
Sbjct: 120 KTPKREIARRQRDEDEWESDEYEEVVDGSASHPIEEDSVST-DFQNHDYEKSSDP 173


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 19  YKKKSNPKTNYWKYLEVFGSKE 84
           +   SNP T+ W + EV G+ E
Sbjct: 62  FSSMSNPPTDEWGFCEVLGADE 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,437
Number of Sequences: 5004
Number of extensions: 70197
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)