Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23g18
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   1.3  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   1.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   3.0  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   3.0  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   6.8  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    24   9.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   9.0  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    24   9.0  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    24   9.0  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   9.0  

>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 309  LNIREKITMKIVCFNCIVFFNYYLVFIELCCW 404
            +   E+  M  VCF+C++F    +V +++  W
Sbjct: 931  IGFEEEGKMLAVCFSCLIFNELIMVALQINTW 962


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 291 VLLK*SLNIREKITMKIVCFNCI 359
           V++K +LN  E++T++I C +CI
Sbjct: 570 VIVKPALNPAERMTVRICCHDCI 592


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 240 AFPSCPPY*FL*SKETRVLLK*SLNIREKITMKIVCFNCIVFFNYYLVFIELCCWMRF 413
           + PS PP   L   +T V +K  L++ +  T++I  FNC     +   F E  C+ +F
Sbjct: 697 SLPS-PPSGLLGPTDTAVFVKPDLSLEKLPTLEINTFNCPAISYFETSFDE--CFSKF 751


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 266 SIWWTRGKSATSAHCWVAR 210
           SIWW+  + AT  + W++R
Sbjct: 67  SIWWSLSRKATRFYRWLSR 85


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 65  RVRQISEDKNLFLLDPST*ISVLNHNG 145
           RVR+   DK+L L+  +T IS LN +G
Sbjct: 77  RVRKFLTDKHLMLMTLATGISRLNLSG 103


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 301 FKSTLVSFDYRNQY-GGQEGKAPHPPIVGLQG 209
           F   LVS  Y   Y GG EGK PH P  G+ G
Sbjct: 61  FIINLVSPIYEYLYWGGLEGKKPHYP-SGIHG 91


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 326 LFTNVEALFQKHSRLF 279
           +F NVE++ Q HSRLF
Sbjct: 515 VFGNVESIRQLHSRLF 530


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 3  KCQKITKINLSFPPQINTLVS 65
          K + IT  NLSF P +N++V+
Sbjct: 22 KNENITFFNLSFQPPMNSIVA 42


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 118 SGRIEQEKILVFRYLTNAETNVLICGGNDKFI 23
           +GR++  KI+  +YL   E N+L     DKF+
Sbjct: 98  TGRVK--KIVPAKYLNTFERNILALQEKDKFL 127


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 212 LQPNNGRMWRFSLLSTILIPVIKRDESAFE 301
           L  +NG+ WR  ++S  + P+ K  + +FE
Sbjct: 72  LSQDNGQSWRNGVISGQVCPIKKLIKHSFE 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,595
Number of Sequences: 5004
Number of extensions: 28241
Number of successful extensions: 64
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)