Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23g16
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 40 2e-04
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 37 0.003
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 36 0.005
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 36 0.007
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.4
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 27 3.1
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 4.2
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 7.3
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 7.3
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch... 25 9.6
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 9.6
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 40.3 bits (90), Expect = 2e-04
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = +1
Query: 244 GRDFLARGQLSDALTHYHAAVEGDPHNYLT----YFKRGTVYYALGKAKFALQDFSKVLE 411
G D +G DA Y A++ DP N T Y R TV L + + AL D L
Sbjct: 230 GNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNALA 289
Query: 412 LKSDFTSARLQRANVYLKLAQYTDAKND 495
+ S + RA + L ++ +A D
Sbjct: 290 IDSSYLKGLKVRAKAHEALEKWEEAVRD 317
Score = 33.5 bits (73), Expect = 0.027
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Frame = +1
Query: 295 HAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARL----------- 441
H + +P N RG V Y G+ A+ F + L+L D T+A+
Sbjct: 167 HDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENT 226
Query: 442 -QRANVYLKLAQYTDAKNDYLEVTYADPYNEEAI 540
+ N + Y DA Y E DP N+E +
Sbjct: 227 KNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETV 260
Score = 25.0 bits (52), Expect = 9.6
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Frame = +1
Query: 244 GRDFLARGQLSDALTHYHAAVEGDPH--NYLTYFK----------RGTVYYALGKAKFAL 387
G+ G+ + A+TH+ A++ DP T FK +G + G + A
Sbjct: 184 GKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQGNDLFRQGNYQDAY 243
Query: 388 QDFSKVLELKSD--FTSARL--QRANVYLKLAQYTDAKND 495
+ +S+ L++ D T A+L RA V L+L + +A +D
Sbjct: 244 EKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSD 283
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 241 LGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKS 420
+GR ++A+ + + A Y AV D N + G +YY + + + AL +S+ + L
Sbjct: 590 IGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNP 649
Query: 421 DFTSARLQRANVYLKL-AQYTDAKNDYLEVTYADPYN 528
+ +Y Q +DA + Y DP N
Sbjct: 650 YISEVWYDLGTLYESCHNQISDALDAYQRAAELDPTN 686
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 280 ALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSAR--LQRAN 453
A+ A+E DP YF+R T + A+ + K A+ DF K L L +AR L+
Sbjct: 58 AINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECE 117
Query: 454 VYLKLAQYTDA 486
+K ++ +A
Sbjct: 118 QLVKRIRFQEA 128
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +1
Query: 241 LGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKS 420
LG+ + +G L A+ ++ +++ +P +Y T+F G L K A++ FS+ L +
Sbjct: 527 LGKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINP 586
Query: 421 DFTSARLQRANVYLKLAQYT 480
+ + A+ LK +T
Sbjct: 587 EDGESWNNLASAMLKAKDHT 606
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 403 VLELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEE 534
+L K D ARL + +KL T ++DYL + PY +
Sbjct: 386 MLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPVDGPYKAD 429
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = -2
Query: 381 EFCFSEGIIHCTSLEVCKIVVWISFDSCVIM--SQSVRELSSSQEVSTQL 238
E+C + G I SLE+ +I +WI S V+ S++ +S++ E+++ +
Sbjct: 140 EYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAKSTVSAAMELTSPI 189
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 583 LVEAYYRGGDHRAAVELATRLLD 651
LVE YY H AA++L T+L D
Sbjct: 536 LVEYYYGKSLHEAALDLLTKLCD 558
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 352 VYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVT 510
V + K+ L DF+KV+ S RLQ ++ + Y + Y E T
Sbjct: 951 VCFVRNSLKYLLDDFTKVITKTFSIKSIRLQFLSLIIYEITYEQLSSWYRERT 1003
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 361 ALGKAKF-ALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYL 501
+ G A+F + + FS+ LE +DF L +L+ TD +N+ L
Sbjct: 180 SFGFAEFESNEQFSRALEALNDFVVPPLYEGGPSTRLSLITDVENEGL 227
>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +1
Query: 289 HYHAAVEGDPHNYLTYFKRGTVYY--ALGKAKFALQDF 396
HY+ P + TYF+ + Y LG FAL F
Sbjct: 207 HYYINSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYF 244
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 313 DPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQY 477
+P++ ++RG Y LG A +D+ LEL D + +Q++ LK Y
Sbjct: 71 NPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLEL--DPNNTYIQKSLHRLKEVYY 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,279
Number of Sequences: 5004
Number of extensions: 39929
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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