Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23g09
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 334 SFYCTQCFWKKDRLLFCHGFW 396
           S +C+QC W +++++F    W
Sbjct: 358 SGFCSQCIW-QEKIVFAAVTW 377


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 342 VERYTLRDRRIL*STGLALLQKSWYAILPAP 250
           V++Y       L STGLA +   W++ L  P
Sbjct: 384 VDQYLYNQTGPLSSTGLAQVTGIWHSNLTTP 414


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 445 PKARLVSSQSSFL--IAATRSHGKTRAGLSSK 356
           PK  L+      L  +AA + HG+ R+G  SK
Sbjct: 345 PKLLLMRVPDDLLNDLAAHKMHGRGRSGKKSK 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,885
Number of Sequences: 438
Number of extensions: 3732
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)