Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23g05
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   0.44 
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    24   2.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   3.1  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    23   5.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    23   5.4  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    23   7.2  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 155 FFFSVCTFDTLIFMTILTIFKTMYIT 78
           F+F+V  F+  I   ++ +FKT+Y T
Sbjct: 668 FYFAVDNFNVFISKEVVRLFKTLYET 693


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 129 YFDIHDHTD 103
           YFD+HDHT+
Sbjct: 758 YFDLHDHTE 766


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 94  KLCI*LVFTMFTETD 50
           KLCI ++F ++T+TD
Sbjct: 250 KLCIRILFNIYTQTD 264


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 14  SGWSLYSFQDLDVCFSEHCKY 76
           SG  ++SF DLD    + C++
Sbjct: 393 SGLRIFSFDDLDEAAKKACRF 413


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  SVSVNIVNTSYIHSFKYCQYGHEYQSIKSA 140
           S  V +++ +  + F+Y  YG  Y S+ +A
Sbjct: 744 SFPVVVISLAAYNQFRYFHYGSAYLSMSAA 773


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 77

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 50 HLNLENCKATTHSWQE 3
          HL L +C   TH W++
Sbjct: 31 HLRLNDCYWDTHDWRK 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,475
Number of Sequences: 5004
Number of extensions: 8314
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)