Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23g05
         (155 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine r...    26   4.2  
Z66499-1|CAA91296.1|  207|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein57 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 27  FTVFKI*MSVSVNIVNTSYIHSFKYC 104
           F +F +  SV VN+V    IHS++YC
Sbjct: 47  FAIFNLIYSV-VNVVVPLDIHSYRYC 71


>Z66499-1|CAA91296.1|  207|Caenorhabditis elegans Hypothetical
           protein T01B7.3 protein.
          Length = 207

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 128 TLIFMTILTIFKTMYITRIYNVH*NRHLNLENCKATTHSW 9
           +L+   +   F   +++ I     N+ +N+E+C+A  H W
Sbjct: 27  SLVLRFVENKFSCKHLSTIQASFQNKTVNVEDCQADLHIW 66


>U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical
           protein C01B7.1a protein.
          Length = 935

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 87  HSFKYCQYGHEYQSIKSANGKKK 155
           ++ KYC +GH+       +GKK+
Sbjct: 592 YTCKYCNFGHDRSQSVQVHGKKE 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,704
Number of Sequences: 27780
Number of extensions: 46247
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)