Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23g03
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    50   2e-07
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    30   0.26 
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    30   0.34 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.78 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   3.2  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   5.5  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   7.3  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.7  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    25   9.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.7  

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 30/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
 Frame = +1

Query: 196 MAGIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHT---D 366
           M+ ++ ++ L+   ++G   VIL+CAL  +K W+P       ++ P+P ++ ++++   D
Sbjct: 1   MSDLRKIIGLSSVLAVGFMLVILSCAL--FKNWYPL------LIAPLPNLLTKKYSTSHD 52

Query: 367 GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFF 546
                +   ++   F     + + FALPIV    G+I   A  ++  G  I++L I  + 
Sbjct: 53  FLQEEDRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYS 112

Query: 547 TIFDMDDSDY 576
             F   + ++
Sbjct: 113 QAFVQHEEEF 122


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 412 ITMGFLVSSFALPIVLARAGVIFWGAC 492
           I +  L+S+FAL I   ++G  FWGAC
Sbjct: 177 IAITLLMSTFALWIKAVKSGSSFWGAC 203


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = +1

Query: 310 VLFYILCPIPTMIARRHTDGAGGSNSACM--ETAVFITMGFLVSSFALPIVLARAGVIFW 483
           +L YI+CP+ T+++  +        S  +  +  V + + F +S   +P V      +F+
Sbjct: 21  ILLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLIDYLFF 80

Query: 484 GACY-LTLAGNVIVYLTI 534
              + L++  +++VYL+I
Sbjct: 81  SPPFSLSIGPSLLVYLSI 98


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 612 SFQKILDFSPHRIIGVVHVKDGEETQDRQIYDHVTGQCKVTCTPKNHTSPGEN 454
           SF   L+F P ++I VV   DG+       Y    G  K+   PK+ T P E+
Sbjct: 17  SFSDDLEFDPGQVIDVVSNLDGDWYTG--TYVDSDGNRKIGSFPKDFTEPAED 67


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 579 RIIGVVHVKDGEETQDRQIYDHVTGQCKVTCTP 481
           R++ +++ +DG E+  + +Y H+    KV+ TP
Sbjct: 680 RVMDILY-RDGPESFSKLLYSHIEPMLKVSITP 711


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 96  KTKQIIYYLLAEVYFISGVFKQEENNY 176
           KT   +YY  A+V F+SG F +  ++Y
Sbjct: 412 KTDSDLYYHRAQVRFVSGEFAEAISDY 438


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
 Frame = +3

Query: 207 KRFGVVGIRGFNWNDI---CHTSLCLTTIQTMVAILRCAILHSVP--NTYDDR*EAY*WC 371
           KR    G RGF   ++   C        + ++  IL C + H  P     DD        
Sbjct: 257 KRADRAGTRGFRAPEVLFRCQNQTSSIDVWSVGVILLCFLTHRYPFFRCEDDIDAIVELA 316

Query: 372 WRFKFRLYGNCSIYHNGIFSQLFCATDSSRQGWCDFL 482
             F      NC++ H  I+S         +  W D +
Sbjct: 317 HIFGRNGMSNCALLHGQIWSDNIPTLLDQKHNWLDLI 353


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 295 WPFFVVLFYILC-PIPTMIARRHTDGAGGSNSACMETAVFI 414
           +PF+ VLFY  C P+    A  H       +S+CM+   ++
Sbjct: 523 YPFYEVLFYDYCRPLNQAFASGHQRSV--IHSSCMDPEYYV 561


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 120 LLAEVYFISGVFKQEENNYT*NIKHNGWNKRFG 218
           ++A   F+S   K E N++  +     W +RFG
Sbjct: 166 MMAAAKFLSQYIKDESNSFVISSDFCHWGRRFG 198


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 652 PNYLTLQIRSIVPFFSKDSRFLTTSHNR 569
           PN L      +   FS+D+R+L +SH R
Sbjct: 183 PNPLQFISNFLSNLFSRDTRYLKSSHGR 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,189
Number of Sequences: 5004
Number of extensions: 58115
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)