Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23f23
(349 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 1.1
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 26 1.5
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 3.4
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 4.4
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 25 4.4
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 4.4
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 24 5.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 24 5.9
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 24 7.8
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 24 7.8
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 188 VSKHFFQNLPEDFAGISYYFWKTKT 114
VSKH QNL + F + +F +T T
Sbjct: 84 VSKHRIQNLAQQFQNVECWFKETST 108
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 1.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 185 SQKALGCSIWYLLSKNLNLHFMEQ----YQG-NIFYCLLYNDEVLTVINYLKPG 331
S LG S W L N+N H E+ Y+G +Y +N L+ + +L G
Sbjct: 530 SALVLGTSFWPLSPNNVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKG 583
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 284 TNNKKYFLDTAP*NVSLDFYLVNTRLNTQELFVSKHFFQNLPEDFAGI 141
T + Y +D N++ D L+N +++T+E N+P+ F G+
Sbjct: 144 TASNNYSVDHIVSNLANDNTLLNRQVSTEEWNSHLRHLLNIPKCFLGV 191
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 4.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 215 YLLSKNLNLHF----MEQYQGNIFYCLLYNDEVLTVINYLKPGV 334
Y +SKNL E + N Y + YND VLT +Y+ G+
Sbjct: 524 YTMSKNLQHTADSIRTELEECNYQYKVQYNDRVLTADSYIAEGL 567
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 24.6 bits (51), Expect = 4.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 230 FYLVNTRLNTQELFVSKHFFQNLP 159
F +NT NT+EL+ S H F P
Sbjct: 563 FNTLNTFYNTEELYFSIHDFGGTP 586
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 302 IPHHYITNNKKYFLDTAP*NVSLDFYLVNTRLNTQELFVSKHFFQ 168
I H + NK Y+L N L L +NT F HF Q
Sbjct: 168 IRKHRLIANKNYYLFLFKFNRKLALELQRAYINTMNWFYLYHFEQ 212
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 24.2 bits (50), Expect = 5.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 221 LSKNLNLHFMEQYQGNIFYCLLYNDE 298
L N LH +EQY ++ ++ DE
Sbjct: 294 LPVNSRLHILEQYNKGLYQIIIATDE 319
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 24.2 bits (50), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 114 GTLQIFVWLLYFLCGIQRYKSKSVVH 37
G + +F+ L+Y+ C I+ SKS V+
Sbjct: 545 GMIAVFLSLVYYYCPIESPVSKSDVY 570
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 242 HFMEQYQGNIFYCLLYNDEVLT 307
++ E Y GN + L+ ND V T
Sbjct: 219 YYFESYAGNDIHFLMLNDSVRT 240
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 23.8 bits (49), Expect = 7.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 230 FYLVNTRLNTQELFV 186
FYL++ R+NT LF+
Sbjct: 46 FYLLHVRINTSPLFI 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,168
Number of Sequences: 5004
Number of extensions: 28330
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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