Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f23
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical pr...    30   0.52 
AC006714-19|AAK39597.1|  218|Caenorhabditis elegans F-box a prot...    29   1.2  
AC006714-15|AAK39600.1|  251|Caenorhabditis elegans F-box a prot...    29   1.2  
U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF025456-2|AAB70958.1|  441|Caenorhabditis elegans Hypothetical ...    27   3.7  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical
           protein B0391.3 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
 Frame = -3

Query: 344 FLVRHRASNSLLQSIPHHYITNNKKYFLDTAP*NVSLDF----YLVNTRLNTQELFVSKH 177
           F+ R+ A N+        YI+  K+  L  AP    + +    +L+    +T+  F+ KH
Sbjct: 87  FIYRYGAVNT---DFKLKYISGTKQSILFIAPIFTGIVWGLFCWLIMGESSTKTAFLRKH 143

Query: 176 FFQNLP---EDFAGISYYFWKTKTER 108
           F +      E+ A ++YYFW    +R
Sbjct: 144 FQEEFGLKIEECAYVAYYFWPVDEDR 169


>AC006714-19|AAK39597.1|  218|Caenorhabditis elegans F-box a protein
           protein 92 protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 284 LYNDEVLTVINYLKPGV 334
           LY D+++ V++YLKPGV
Sbjct: 146 LYPDKIIKVVSYLKPGV 162


>AC006714-15|AAK39600.1|  251|Caenorhabditis elegans F-box a protein
           protein 91 protein.
          Length = 251

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 284 LYNDEVLTVINYLKPGV 334
           LY D+++ V++YLKPGV
Sbjct: 146 LYPDKIIKVVSYLKPGV 162


>U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical
           protein F58F9.10 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 245 NVSLDFYLVNTRLNTQELFVSKHFFQNLPEDFA--GISYYFWKTKTERCRSLCGCCTFCV 72
           N  L  +L+   +  Q+ FV ++F Q   +     G  +  W T T++C+  CG C+  +
Sbjct: 2   NYFLSLFLIVLLVINQDSFVIRYFKQCAADVLCPPGGLWSEWTT-TDKCKQSCGSCSEVI 60

Query: 71  AFR 63
             R
Sbjct: 61  YIR 63


>Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.4 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 93  WLLYFLCGIQRYKSKSVVHIYLYELAF 13
           W +  +CGI +  + +++H+ ++ L F
Sbjct: 106 WQIIIMCGILQISTATMIHLLIFRLKF 132


>AF025456-2|AAB70958.1|  441|Caenorhabditis elegans Hypothetical
           protein C46F9.3 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = -3

Query: 227 YLVNTRLNTQELFVSKHFFQNL------PEDFAGISYYF---WKTKTERCRSLCGCCTFC 75
           YL N++ ++   FV KH F+N+        D++ +  +F   W+ + ++     G   +C
Sbjct: 136 YLPNSQPDSDNSFVMKHTFKNISRFVVKERDYSDLEEHFNIPWRMQIQKSNEFLGIFLYC 195


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 107  NVP-FWSSRSNRRCRQSLREGSGKNVCSQKALGCSIWYLLSKNLNLHFMEQY 259
            N P FW ++S+ +    + EG+G  +C +  +   +   +   +    M++Y
Sbjct: 973  NAPQFWDNKSSTKPLTYVTEGAGTTICPKDFINPEMRMTIPLQVTKDMMDEY 1024


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,900,123
Number of Sequences: 27780
Number of extensions: 159039
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)