Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23f22
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1454 - 27222004-27222296,27222389-27222500 36 0.015
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 33 0.14
09_04_0506 - 18188785-18190599 32 0.24
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 30 0.97
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 28 3.0
03_05_0292 + 22846273-22846377,22847161-22847823 28 3.9
08_02_1084 - 24232968-24234779 27 5.2
04_04_0149 - 23123020-23123034,23123100-23123143,23123916-231239... 27 5.2
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666... 27 5.2
10_08_0534 + 18595520-18595828,18595917-18597149 27 6.9
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 6.9
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200... 27 6.9
02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824 27 6.9
09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094 27 9.1
>08_02_1454 - 27222004-27222296,27222389-27222500
Length = 134
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 274 KSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEV-DTLEQF 408
K GG P R LPPQ ++ + CGD+ DL +EV + L+QF
Sbjct: 13 KKKGGVAKKPISRKKLPPQNCSESQDCGDH---DLGDEVEEQLQQF 55
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 115 VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNA 273
+K++ISG+ NKE + V + + N++ + ++ PG+ SD+D A
Sbjct: 361 MKLFISGVVHNKEDAGAKSYVRVPAEINNLEKDSFELYIPGKGSDRDLADTKA 413
>09_04_0506 - 18188785-18190599
Length = 604
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 EEYCGDYDQFD-LANEVDTLEQFLKLEAPPEEPP 441
++Y GD D +D L N+V+ + FL+ PP +PP
Sbjct: 22 DQYYGDDDDYDDLYNDVNVGDGFLQSSHPPPQPP 55
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 29.9 bits (64), Expect = 0.97
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Frame = +1
Query: 196 KNIKYEVIDITEP----GRESD-KDFMQNNAKSSGGTVSDPNPRSP---LPPQMFNDEEY 351
K + E++ T+ G E KDF+ N K G +VSDP RS L + +++
Sbjct: 10 KEVLVEIVRFTQKNGLKGAEGGWKDFLARNDKKFGASVSDPKKRSKDVLLAFLLTFSKDF 69
Query: 352 CGDY--DQFDLANEVDTLEQFLKLEAPPEEPPQ 444
Y NE EQFLK E P + PQ
Sbjct: 70 QKVYFGKLIRRLNERSAFEQFLK-EFPDKISPQ 101
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 253 DFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDL 378
D+ +NNA + V DP PR P+ F D + +FD+
Sbjct: 60 DYAKNNAWEALFHVDDPGPRVPIAKGKFLDVNQALEVVRFDI 101
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 332 ICGGSGERGFGSLTVPPEDLALFCMKSLSDSLPGSV 225
+CGG G RG GS T D A CM ++ G+V
Sbjct: 177 MCGGGGRRGRGSSTQGGGD-ACGCMAEFAEVADGAV 211
>08_02_1084 - 24232968-24234779
Length = 603
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 343 EEYCGDYDQFD-LANEVDTLEQFLKLEAPPEEPPQE 447
++Y GD D FD L N+V+ + FL + + PP +
Sbjct: 22 DQYYGDDDDFDDLYNDVNVGDGFLHNSSSSQPPPSQ 57
>04_04_0149 -
23123020-23123034,23123100-23123143,23123916-23123937,
23124003-23124068,23125100-23125734,23125966-23126035,
23126150-23126209
Length = 303
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 217 IDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQ 369
I I + G+E+ + + G+++ P+P PLP + + GD ++
Sbjct: 55 IGIVKDGKEAKASTSPTGTEPNAGSMTVPSPHPPLPRRRLDVRSKGGDPEE 105
>02_02_0089 -
6668179-6668316,6668386-6668565,6668648-6668729,
6669317-6669405,6669503-6669580,6670502-6670559,
6670727-6670956,6671174-6671318,6671417-6671458,
6671681-6671853
Length = 404
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +1
Query: 304 NPRSPLPPQMFNDEEY----CGDYDQFDLANEVDTLEQFLKL 417
NPR+ P Q+FN+E + GD + D T+E FL++
Sbjct: 95 NPRNNYPAQVFNNENHQLNLYGDNVEVDYRGYEVTVENFLRV 136
>10_08_0534 + 18595520-18595828,18595917-18597149
Length = 513
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 90 EKYLIKHGCQNLYQWHFWQQGGEETSAAGPDDFRLKKYK 206
EK L K C NL WH + G+ AG + L+ ++
Sbjct: 240 EKVLEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQ 278
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/71 (23%), Positives = 28/71 (39%)
Frame = +1
Query: 235 GRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLK 414
G E K +G N +P + +E+ D D + + + +E++LK
Sbjct: 329 GNELSKPVSDETETGTGDAGDKGNEENPKKFGIVTEEDSKADKDVAEKISSM--IEEWLK 386
Query: 415 LEAPPEEPPQE 447
PP PP E
Sbjct: 387 TRPPPPPPPVE 397
>02_04_0589 -
24117688-24119282,24119881-24119908,24120004-24120089,
24120196-24120220,24121188-24121326,24122344-24122567,
24122674-24122691
Length = 704
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 129 QWHFWQQGGEETSAAGPDDFRLKKYK 206
QW + GG+ T G +D++ K+Y+
Sbjct: 118 QWGRGRSGGQMTEVTGREDYQRKRYR 143
>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
Length = 613
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 253 DFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDY 363
D+M N +SS G DPN + P CG++
Sbjct: 180 DYMINQTESSHGGAEDPNTNTNTNPDPMLLRRRCGNF 216
>09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094
Length = 326
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 292 VSDPNPRS-PLPPQMFNDEEYCGDYDQF-DLA 381
+ DP P PLPP + D+E GD +F D+A
Sbjct: 149 LDDPEPHFIPLPPPLKADKELIGDAREFRDIA 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,418,191
Number of Sequences: 37544
Number of extensions: 237571
Number of successful extensions: 518
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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