Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23f21
(348 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 30 0.089
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 2.5
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 25 4.4
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 4.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 4.4
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 24 5.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 5.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 24 5.9
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 24 7.8
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 24 7.8
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 30.3 bits (65), Expect = 0.089
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 32 KSWTKYFSNMSSLLPYL 82
KSW +YF + S+LLPYL
Sbjct: 237 KSWAEYFRSFSTLLPYL 253
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 2.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 334 KSFHDDEAIDNFHSNVVRRKVLNVQI 257
+SF +DE I SNVVR K V I
Sbjct: 323 ESFSEDENISTGTSNVVRNKPTTVNI 348
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 171 KYPGANFHGGS--QDCVREVRLRRINLNSRSIW 263
+Y F GS ++C R L + LNSR W
Sbjct: 131 RYQEVAFTAGSILRECSRHEALNEVLLNSRDFW 163
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 24.6 bits (51), Expect = 4.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 203 PGLREGSSIKKDKS--KFQINLDIQHFSPDDITVKIVDGFVVVEALHE 340
PG+ SI S K IN I+ D TV+I +G V+E +HE
Sbjct: 1124 PGVVAMKSISDHGSHCKSYINPPIEQIVHDIPTVRISNGKDVIENIHE 1171
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 4.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 316 EAIDNFHSNVVRRKVLNVQIDLEFRFILLNR 224
++IDNF ++R + +DL +FI ++R
Sbjct: 157 QSIDNFVEKILRHAETSAIMDLLLKFISMDR 187
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 24.2 bits (50), Expect = 5.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 168 QKYPGANFHGGSQDCVREV 224
++ G+NFH G DC +E+
Sbjct: 73 EQVEGSNFHFGEVDCSKEL 91
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.2 bits (50), Expect = 5.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 221 SSIKKDKSKFQINLDIQHFSPDDI 292
SSI+K+K + LDI+ +SP+++
Sbjct: 477 SSIEKEKVEIVPFLDIRKYSPNEV 500
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 24.2 bits (50), Expect = 5.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 259 IDLEFRFILLNRTSLTQSWLPP*KLAPGYFW 167
+DL FRFI ++ S+ +L K G FW
Sbjct: 622 VDLPFRFINISVFSIVLYFLTNLKRTAGGFW 652
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 234 FLIELPSRNPGCLHENWLL 178
F +ELPSR P C +LL
Sbjct: 616 FFLELPSRFPSCSPRMFLL 634
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 23.8 bits (49), Expect = 7.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -3
Query: 322 DDEAIDNFHSNVVRRKVLNVQID-----LEFRFILLNRTSLTQSWLPP*KLAPGY 173
DD+ + N S ++NV++D L R I+L T + WL +P Y
Sbjct: 692 DDQIVFNKLSEKNLEDIVNVRLDEVQQRLNDRRIILTVTEAARKWLAEKGYSPAY 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,490
Number of Sequences: 5004
Number of extensions: 23384
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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