Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f21
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0605 - 4453409-4453692,4454541-4454594,4454706-4454812,445...    28   1.8  
12_02_0905 - 24188563-24189189,24189648-24190577                       27   5.3  
07_03_1085 - 23851852-23853165                                         27   5.3  
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376...    27   5.3  
01_05_0611 - 23644692-23646439,23647011-23647551,23648851-236489...    27   5.3  
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    26   9.3  
06_03_0923 - 25972063-25972840,25973549-25973620,25973711-259737...    26   9.3  

>03_01_0605 -
           4453409-4453692,4454541-4454594,4454706-4454812,
           4454865-4454928,4456996-4457896
          Length = 469

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 174 YPGANFHGGSQDCVREVRLRRINLNSRS 257
           + GA  +G + DC RE+R R +  N+R+
Sbjct: 204 FAGAGMNGEAWDCFREMRARGVRGNART 231


>12_02_0905 - 24188563-24189189,24189648-24190577
          Length = 518

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 194 WRQPGLREGSSIKKDKSKFQINLDIQHFSPDDITVKIVDGFVV 322
           WR     +G   K+ K      L +Q   PD  T  +V G ++
Sbjct: 268 WRSGSAGDGDQDKEKKGVIDALLALQETDPDHYTDNVVKGIIL 310


>07_03_1085 - 23851852-23853165
          Length = 437

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 209 LREGSSIKKDKSKFQINLDIQHFSPDDITVKIVDGFVVVEALHE 340
           L  G+ + +D  + ++ +D + F P ++++ + D     EAL+E
Sbjct: 94  LYTGTIVTEDGKEKKVTIDFEPFKPINVSLYLCDNKFHTEALNE 137


>03_06_0619 -
           35136435-35136728,35137155-35137358,35137476-35137646,
           35137902-35138050,35138380-35138527,35138614-35138682,
           35138767-35139027,35139223-35139417,35139772-35139888,
           35140026-35140961
          Length = 847

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 128 QSVEALRRYVIVLHRSNMVVKKTYC*NISSNFFRKEM 18
           +S + LRR++I +H   MVV   Y    S+N  ++ M
Sbjct: 683 RSAQKLRRFMIYVHSKGMVVDDEYVIIGSANINQRSM 719


>01_05_0611 -
           23644692-23646439,23647011-23647551,23648851-23648952,
           23649244-23649441
          Length = 862

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 253 LEFRFILLN--RTSLTQSWLPP*KLAPGYF 170
           LEF  +  N  +  L ++W+PP KL  GYF
Sbjct: 366 LEFLDLSSNSLKLDLHEAWIPPFKLKKGYF 395


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 338 REELPRRRSHRQFSQ*CRPEKSVECPN*SGI*IYPS 231
           REE  RR ++R F   CR  K++ C + +    YPS
Sbjct: 648 REE-ERRTNNRSFLLGCRRRKALRCHHGNSFLTYPS 682


>06_03_0923 -
           25972063-25972840,25973549-25973620,25973711-25973747,
           25973852-25973910,25974011-25974295,25974653-25974954,
           25974986-25975116,25975209-25975296
          Length = 583

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 150 CCRCCGQKYPGANFHGG 200
           CCRCC     G N +GG
Sbjct: 135 CCRCCCSGAGGGNGNGG 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,980,034
Number of Sequences: 37544
Number of extensions: 147809
Number of successful extensions: 369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)