Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f21
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   4.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   7.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   9.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 221 FPHAILAASMKIGSWIF 171
           FP+ +    +K+GSW +
Sbjct: 160 FPYDVQTCVLKLGSWTY 176


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 32  KSWTKYFSNMSSLLPYLIDVERSRIFEEPQ 121
           ++WT+ F+ +  L+P     E  R F++ Q
Sbjct: 238 ETWTRVFNTLVDLVPKHACAEYRRNFKKMQ 267


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 144 KNCCRCCGQKYP 179
           KNCCR    K+P
Sbjct: 398 KNCCRSWLSKFP 409


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 144 KNCCRCCGQKYP 179
           KNCCR    K+P
Sbjct: 398 KNCCRSWLSKFP 409


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 159 CCGQKYPG 182
           CCG ++PG
Sbjct: 88  CCGMRWPG 95


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 80  NMVVKKTYC*NISSNFF 30
           N +++ T C N  +NFF
Sbjct: 403 NQLIRYTRCENPKTNFF 419


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2

Query: 221 FPHAILAASMKIGSWIF 171
           FP       MK GSW F
Sbjct: 158 FPFDQQTCIMKFGSWTF 174


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 2   TXGGPAFLF*KSW 40
           T  GPAFL  K W
Sbjct: 504 TGTGPAFLTIKEW 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,689
Number of Sequences: 438
Number of extensions: 1463
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)