Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f18
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   1.3  
04_04_0895 - 29168107-29168229,29168617-29170068                       26   4.1  
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732...    25   9.4  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 219 SSCSTCKW*CTESRGRSMGRSKNRR 145
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 270 DGCHRRHPRRYVSEFNISSC 211
           DGC RR+P  Y S+  I +C
Sbjct: 259 DGCIRRYPALYGSDDRIQAC 278


>11_03_0177 +
           11269754-11270320,11271701-11272180,11272663-11273292,
           11273377-11273443,11273510-11273620,11273696-11275206
          Length = 1121

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 284 FFLTLMVVIDDTRVDMFPN 228
           F  +++V+ DDTR+D FP+
Sbjct: 690 FCRSILVMPDDTRMDQFPS 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,756,541
Number of Sequences: 37544
Number of extensions: 53828
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)