Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f17
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   1.8  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    23   5.6  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    22   9.8  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    22   9.8  

>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 40  PSVQRRMQFAWVVLL 84
           P ++RRM+F W+ LL
Sbjct: 93  PLLKRRMEFIWITLL 107


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 83  NKTTQANCIRRCTEGIRLKLCV 18
           NK  Q   + + TEG+ L LC+
Sbjct: 174 NKLLQTPAVSKSTEGVGLFLCL 195


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 59  CSSPGWSCYGL 91
           C + GW+C+G+
Sbjct: 313 CVAAGWACFGI 323


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 68  PGWSCYGL 91
           PGW C+GL
Sbjct: 122 PGWDCHGL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,189
Number of Sequences: 5004
Number of extensions: 5445
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)