Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f17
         (120 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216...    26   4.9  
11_06_0353 - 22602134-22602373,22602854-22603228                       25   8.6  
03_01_0564 - 4176177-4178096                                           25   8.6  
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11...    25   8.6  

>01_07_0370 -
           43119049-43120278,43121376-43121420,43121421-43121662,
           43121908-43122686,43123123-43123463,43123565-43123785,
           43123866-43124176,43124257-43124516,43124836-43124918,
           43124940-43125036,43125132-43125305,43126215-43126592
          Length = 1386

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 10  SPTTQSFRRIPSVQRRMQFAWVVLLWIGRTXTPIL 114
           S   Q  R +PSVQ  ++F  V   ++ R   PIL
Sbjct: 362 SVVNQDGRTLPSVQGNIEFRNVYFSYLSRPEIPIL 396


>11_06_0353 - 22602134-22602373,22602854-22603228
          Length = 204

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   EKRSPTTQSFRRIPSVQRRM 60
           EKR+PTT + ++IP   + M
Sbjct: 72  EKRAPTTSALQKIPKAAKPM 91


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 79  RPPRRTAFAVALKEYA*SFVWLVIVS 2
           RPPRR  F   L  +  S +W  I++
Sbjct: 464 RPPRRFLFPWVLGGFVMSIIWFYIIA 489


>03_01_0014 +
           113638-113754,113836-113950,114570-114835,115365-115575,
           115915-115979,118723-118930,119457-119566,119663-119913,
           120250-120356,120442-120509,120624-120701,121070-121198,
           121341-121481,122297-122344,122648-122743,124071-124183,
           124441-124591,124745-124818,124913-125072,125356-125454,
           125532-125618,125761-125907
          Length = 946

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 108 RSXSSPNP*QD-HPGELHSPLH*RNTPKALCG 16
           R   +P P +D  PGEL+ P+H      + CG
Sbjct: 18  REHDAPAPAEDIRPGELNQPVHLEGRRCSECG 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,611,223
Number of Sequences: 37544
Number of extensions: 40459
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)