Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f14
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1071 - 8755157-8755510                                           57   1e-08
06_01_1072 - 8756386-8756706                                           51   9e-07
01_01_0530 - 3877337-3877396,3877709-3877837,3877954-3878221,387...    28   6.9  

>06_01_1071 - 8755157-8755510
          Length = 117

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 41/72 (56%)
 Frame = +1

Query: 199 RALDFEVFGRVQGVFFRKYTKEQADKLGLRGWCKNTAQGTVLGHMQGTLDKIEVMMHWLK 378
           +A+   V GRVQGV FR +T E A+ LGL GW +N   GTV   + G   K++ M+    
Sbjct: 26  KAVRVVVKGRVQGVGFRDWTAETAESLGLAGWVRNRRDGTVEALLSGDPAKVDEMVSRHL 85

Query: 379 TTGSPSSKIDKV 414
             GSP+S +  V
Sbjct: 86  PVGSPASAVTAV 97


>06_01_1072 - 8756386-8756706
          Length = 106

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +1

Query: 199 RALDFEVFGRVQGVFFRKYTKEQADKLGLRGWCKNTAQGTVLGHMQGTLDKIEVMM 366
           +A+   V GRVQGVFFR +T E A  LGL GW +N   GTV   + G   +++ M+
Sbjct: 15  KAVRVVVKGRVQGVFFRDWTVETARALGLAGWVRNRRDGTVEALLSGDPARVDEMV 70


>01_01_0530 -
           3877337-3877396,3877709-3877837,3877954-3878221,
           3878385-3878776,3879003-3879119,3879209-3879304,
           3879775-3879948,3880077-3880243,3880800-3880965,
           3881040-3881178,3881767-3881901,3882157-3882161
          Length = 615

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 193 MFRALDFEVFGRVQGVFFRKYTKEQADKLGLRGWCKN 303
           M RA   E++G++QGVF     ++    L L G C +
Sbjct: 309 MNRASSLEIYGKMQGVFIEMDCEKNMPLLVLYGKCSS 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,500
Number of Sequences: 37544
Number of extensions: 242322
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)