Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23f13
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23514-5|AAC46541.2| 590|Caenorhabditis elegans Phosphatase 2a ... 221 5e-58
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 31 0.56
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 29 2.2
AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical ... 29 3.0
Z70310-7|CAA94364.1| 607|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z47356-4|CAA87417.1| 431|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 29 3.9
Z68159-8|CAD01080.1| 310|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 27 9.1
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 27 9.1
>U23514-5|AAC46541.2| 590|Caenorhabditis elegans Phosphatase 2a
regulatory a subunitprotein 1 protein.
Length = 590
Score = 221 bits (539), Expect = 5e-58
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +1
Query: 148 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTET 327
M+ + TD++LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALGVERT++ELI FLT+T
Sbjct: 1 MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60
Query: 328 IYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 507
IYDEDEVLL LAEQLG+F LVGG + HCLL PLE LA VEETVVRDKAV SLR +A+
Sbjct: 61 IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120
Query: 508 HSPQALEEHFVPLVQRLAGGDWFTS 582
HS +LEEHFVP+++RLA GDWFTS
Sbjct: 121 HSSASLEEHFVPMLRRLATGDWFTS 145
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 582 RTSACGLFSVCYPRVSAPVKAELRQHFR 665
RTSACGLFSV YPRVS +K+EL+ FR
Sbjct: 146 RTSACGLFSVVYPRVSPAIKSELKSMFR 173
Score = 31.9 bits (69), Expect = 0.42
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +1
Query: 169 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYD-EDE 345
T L PI + + L ++ ++RLN I L + +G + + L+P + D +
Sbjct: 363 TVSELLPIYMQL--LNDQTPEVRLNIISSLDKVNEVIGAAQLSTSLLPAIVGLAEDGKWR 420
Query: 346 VLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 525
V LA+ + + + +G F LLP +R+ + ++ + + Q
Sbjct: 421 VRLAIVQFMPLLASQLGQEFFDEKLLPLCLNWLTDHVFSIREASTLIMKELTQKFGGQWA 480
Query: 526 EEHFVPLVQRL 558
+ VP +Q+L
Sbjct: 481 STNIVPKMQKL 491
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 31.5 bits (68), Expect = 0.56
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = -3
Query: 599 STSRCSEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGR 420
S SR ++SPPARR + G+ S S RS+ A S + S + GGR
Sbjct: 198 SRSRSPTRSRSPPARRRSPGSDRSDRKSRS-ASPKKRSDKRARSESKSRSRS-----GGR 251
Query: 419 RQCANSPP 396
R +NSPP
Sbjct: 252 RSRSNSPP 259
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 614 AYTK*STSRCSE-VNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAAN 438
+Y+K S+C+E + S + +C S+ CG + S + + T + + ++S+ N
Sbjct: 200 SYSK-CVSQCAEQCSGSNTSNNQQCQQQCQSNTCGQYQSTVSTTTTTPIIQIVLNSSVLN 258
Query: 437 VSRGGRRQCANS 402
QC NS
Sbjct: 259 SGSECEPQCENS 270
>AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical
protein Y46H3D.8 protein.
Length = 247
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 611 YTK*STSRC--SEVNQSPPARRCTSGTKCSSSACGLWCS 501
Y + + SRC S S + CTS T SSSAC W +
Sbjct: 184 YCQKTCSRCASSTTTASSSSSSCTSYTADSSSACASWAA 222
>Z70310-7|CAA94364.1| 607|Caenorhabditis elegans Hypothetical
protein R11A8.4 protein.
Length = 607
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 539 TKCSSSACGLWCSATARSEATALSR 465
T C SS CG CS+ A SEA LSR
Sbjct: 530 THCESS-CGSSCSSNADSEANQLSR 553
>Z47356-4|CAA87417.1| 431|Caenorhabditis elegans Hypothetical
protein T15H9.4 protein.
Length = 431
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 451 EETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDW 573
E+ ++ +A AS ++ + P+A HF+P+V + W
Sbjct: 33 EDKIISIRATASSASITKESVPEAPPTHFIPVVVTVEPDAW 73
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 578 VNQSPPARRCTSGTKCS-SSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQC 411
V Q PA +C S + S SS+C AT + + S S AN S G QC
Sbjct: 328 VQQQQPAAQCQSACQDSCSSSCQAAQPATTACQQSPQSPQNSCSCQANYSPCGNGQC 384
>Z68159-8|CAD01080.1| 310|Caenorhabditis elegans Hypothetical
protein C33D9.9 protein.
Length = 310
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +1
Query: 145 KMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIK-------KLSTIALALGVERTKSE 303
++ +S+ S YPIA + + LKNE++Q ++K KL+ L + R K
Sbjct: 235 RVISSEELEASSSYPIASMKNCLKNEEIQKMQKALKEKDEQISKLTEQLQGLLINRDKET 294
Query: 304 LIPFLTETIYDED 342
+ L + YD D
Sbjct: 295 KVEDLQQFEYDGD 307
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 397 GGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 507
GG+ A+C P ++ AV V ++ VA R V H
Sbjct: 262 GGDAAYCPCPARSSVMAVNRRVAVNRNVARNRVVVRH 298
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 584 SEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALS-RTTVSSTAANVSRG 426
S V PPA ++ ++ SSSA + S+T S A + S + T SST+ S G
Sbjct: 717 SSVTTQPPASSRSTASQGSSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSSTG 770
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,006,697
Number of Sequences: 27780
Number of extensions: 269792
Number of successful extensions: 1054
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -