Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f10
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016676-8|AAG24105.1|  502|Caenorhabditis elegans Hypothetical ...    31   0.87 
U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z70213-5|CAA94174.1|  256|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AF016676-8|AAG24105.1|  502|Caenorhabditis elegans Hypothetical
           protein F41B5.9 protein.
          Length = 502

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +1

Query: 334 IHQTHNSKRRSPNYQLYFGNWRGISKFLNNRRTSLRKDGTEQRQAWRHYVFKLNLQDISQ 513
           +H  +   R+ PNY         + K  N  RT LR+   + + A    VFKL       
Sbjct: 372 LHHYYQEVRKLPNYSARLAR---MMKVNNLMRTDLRQKSEKAKLAMAFDVFKLQFSHPEM 428

Query: 514 KYFDGN 531
            Y DG+
Sbjct: 429 IYLDGD 434


>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 589 KNCIHCRRRLYEKSNFRKNNFHRSTSAICLEGLI*KHNVSKPVFVQFRLF 440
           K C H   R++E++NF +N+    T  +    LI   N ++   V F +F
Sbjct: 44  KTCSHLEIRIFERNNFLENSERNDTMELMTRKLIRVSN-NQSQLVSFWIF 92


>AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical
           protein Y34B4A.5 protein.
          Length = 153

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 230 SRFEKCKGPRRRDCSDVKLDLNNGIFITYDILVKSYIK 343
           +++ +C GP RRDC+ +   +  G+ +   + V S  K
Sbjct: 17  NKYYECLGPARRDCTSISYHVKAGLRLGDAVQVVSMYK 54


>Z70213-5|CAA94174.1|  256|Caenorhabditis elegans Hypothetical
           protein ZK930.6 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 52  LMYLIFNDVLFRICFVSIYSLFTPAFRPELYKARNSNQRYNFILKRL 192
           ++ L F  +L + CF +  ++FT  +   LYK +    R+   LK L
Sbjct: 5   ILILNFQSLLIKYCFDARCTMFTRIYIERLYKLQKDFARWPRFLKLL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,878
Number of Sequences: 27780
Number of extensions: 275551
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)