Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f09
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   4.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 474  PSPDPWF*HPPSAPLV*PARVHPWAAL 394
            P+ +P   HPPSAPL  P    P A L
Sbjct: 982  PTSEPPKDHPPSAPLSKPVSTSPAAPL 1008


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 366 FEMKIKQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQP 506
           FE+  K E    P G +W   R +L    K +D+ +  + E + K P
Sbjct: 260 FEILEKVEKAH-PDGPMWPLHRAKLLSMVKKQDEAIVVLEELMAKPP 305


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
 Frame = +3

Query: 312 IVVNST*HRYE*YSKTLNFEMKIKQELLEQPTGELW----QAIRVELKEDAK-TKDQDLA 476
           I++N +  +YE YS+  +    I +E    P  ++W       + +L+E     ++++ A
Sbjct: 11  IIINESDTKYEVYSEVNSSNRWIAKEDCPSPLEDVWLLKLAGHKRKLEEPLSCMRNEEPA 70

Query: 477 A----IREWLKKQ-PHLPDDWENGAADDIPTRQQLF 569
           +    I ++L+    H  +D+     D+ P+ QQLF
Sbjct: 71  SKQREIEKFLRTDLDHSENDFLTQEVDEFPSTQQLF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,326
Number of Sequences: 5004
Number of extensions: 41925
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)