Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f09
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0175 + 22966151-22967614                                         31   0.87 
06_02_0083 - 11539955-11540257,11540594-11540742,11540938-115410...    29   2.0  

>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 577 SPRKSCCRVGMSSAAPFSQSSGRCG 503
           +PR+SCC  G SSAA   +S+ RCG
Sbjct: 74  TPRRSCC--GSSSAAGTPRSAARCG 96


>06_02_0083 -
           11539955-11540257,11540594-11540742,11540938-11541025,
           11541151-11541462,11541554-11541709,11541941-11542156,
           11542251-11542508,11542740-11542943,11543052-11543096
          Length = 576

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 189 IRKTLSVISVFKEMYTSTPREVRSTISE-H*ELALG*RENAKIVVNST*HRYE*YSKTLN 365
           + K L  +S+   + T    +  ST++E H  L     +N K + N T  + +    TLN
Sbjct: 173 LEKVLDYVSMIHNLCTVLGMDFLSTVTEVHPSLDDSIGDNCKSISNDTLSKLDKTVATLN 232

Query: 366 FEMKIKQELLEQPTGELW 419
            + K +   L++  G+L+
Sbjct: 233 EDKKSRLSKLQELAGQLY 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,443
Number of Sequences: 37544
Number of extensions: 266378
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)