Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f09
         (577 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001686-1|AAN71441.1|  315|Drosophila melanogaster RE58223p pro...    42   8e-04
AE014297-246|AAF52032.1|  308|Drosophila melanogaster CG2663-PA,...    42   8e-04
AE014297-245|AAN13281.1|  315|Drosophila melanogaster CG2663-PB,...    42   8e-04
BT012303-1|AAS77428.1|  311|Drosophila melanogaster LP22879p pro...    38   0.013
AE014296-833|AAX52731.1|  311|Drosophila melanogaster CG33514-PA...    38   0.013
AE014296-194|ABC66123.1|  317|Drosophila melanogaster CG33965-PA...    36   0.039
AE014296-195|ABC66124.1|  310|Drosophila melanogaster CG33966-PA...    36   0.052
AY084181-1|AAL89919.1|  308|Drosophila melanogaster RE54230p pro...    35   0.069
AE013599-900|AAM71078.1|  308|Drosophila melanogaster CG30339-PA...    35   0.069
AY061455-1|AAL29003.1|  334|Drosophila melanogaster LD40136p pro...    33   0.21 
AE014296-2147|AAF49914.2|  334|Drosophila melanogaster CG10657-P...    33   0.21 
AY075483-1|AAL68293.1|  313|Drosophila melanogaster RE39480p pro...    31   0.85 
AE014134-1130|AAN10590.1|  313|Drosophila melanogaster CG31636-P...    31   0.85 
AE013599-905|AAF58912.1|  313|Drosophila melanogaster CG12926-PA...    31   0.85 
AY051730-1|AAK93154.1|  550|Drosophila melanogaster LD25919p pro...    31   1.5  
AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin su...    31   1.5  
AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4 ...    31   1.5  
AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-P...    31   1.5  
BT016116-1|AAV37001.1|  875|Drosophila melanogaster LD10035p pro...    30   2.6  
AF099909-1|AAD13219.1|  875|Drosophila melanogaster topoisomeras...    30   2.6  
AE014298-867|AAF46144.1|  875|Drosophila melanogaster CG3458-PA ...    30   2.6  
AE014296-1011|AAF50745.1|  324|Drosophila melanogaster CG10546-P...    29   4.5  
AE014297-3364|AAF56166.1|  353|Drosophila melanogaster CG10301-P...    28   7.9  

>BT001686-1|AAN71441.1|  315|Drosophila melanogaster RE58223p
           protein.
          Length = 315

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 390 LLEQPTGELWQAIRVELKE--DAKTKDQDLAAIREWLKKQPHLPDDWEN 530
           ++  PT +   +IR EL+E  D    ++D+  IREWL+ QPHLP D ++
Sbjct: 9   MMLHPTPDQRVSIREELREPEDPADIERDIKLIREWLETQPHLPKDMDD 57


>AE014297-246|AAF52032.1|  308|Drosophila melanogaster CG2663-PA,
           isoform A protein.
          Length = 308

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 390 LLEQPTGELWQAIRVELKE--DAKTKDQDLAAIREWLKKQPHLPDDWEN 530
           ++  PT +   +IR EL+E  D    ++D+  IREWL+ QPHLP D ++
Sbjct: 2   MMLHPTPDQRVSIREELREPEDPADIERDIKLIREWLETQPHLPKDMDD 50


>AE014297-245|AAN13281.1|  315|Drosophila melanogaster CG2663-PB,
           isoform B protein.
          Length = 315

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 390 LLEQPTGELWQAIRVELKE--DAKTKDQDLAAIREWLKKQPHLPDDWEN 530
           ++  PT +   +IR EL+E  D    ++D+  IREWL+ QPHLP D ++
Sbjct: 9   MMLHPTPDQRVSIREELREPEDPADIERDIKLIREWLETQPHLPKDMDD 57


>BT012303-1|AAS77428.1|  311|Drosophila melanogaster LP22879p
           protein.
          Length = 311

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 405 TGELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHL 512
           T EL +  + +LKED +  + DL A + W+++QPHL
Sbjct: 9   TPELQKVAKEQLKEDPERLEADLQAFKTWIEQQPHL 44


>AE014296-833|AAX52731.1|  311|Drosophila melanogaster CG33514-PA
           protein.
          Length = 311

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 405 TGELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHL 512
           T EL +  + +LKED +  + DL A + W+++QPHL
Sbjct: 9   TPELQKVAKEQLKEDPERLEADLQAFKTWIEQQPHL 44


>AE014296-194|ABC66123.1|  317|Drosophila melanogaster CG33965-PA
           protein.
          Length = 317

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 435 ELKEDAKTKDQDLAAIREWLKKQPHL 512
           EL E     + D+AA++EWL+KQPHL
Sbjct: 23  ELNEVPSRVESDIAALKEWLQKQPHL 48


>AE014296-195|ABC66124.1|  310|Drosophila melanogaster CG33966-PA
           protein.
          Length = 310

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 411 ELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHL 512
           EL +     L E     D D+AA+R+W+K+QPHL
Sbjct: 10  ELQKTAIENLNEVPNKLDDDIAALRDWIKQQPHL 43


>AY084181-1|AAL89919.1|  308|Drosophila melanogaster RE54230p
           protein.
          Length = 308

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 405 TGELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHL 512
           + EL +    EL E  +    DL A+R+WL KQPHL
Sbjct: 8   SAELRRIAETELNEVEERVPADLKALRDWLAKQPHL 43


>AE013599-900|AAM71078.1|  308|Drosophila melanogaster CG30339-PA
           protein.
          Length = 308

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 405 TGELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHL 512
           + EL +    EL E  +    DL A+R+WL KQPHL
Sbjct: 8   SAELRRIAETELNEVEERVPADLKALRDWLAKQPHL 43


>AY061455-1|AAL29003.1|  334|Drosophila melanogaster LD40136p
           protein.
          Length = 334

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 435 ELKEDAKTKDQDLAAIREWLKKQPHL 512
           EL ED   + Q LA  REW++K PH+
Sbjct: 42  ELHEDENIRRQALAQFREWIEKHPHI 67


>AE014296-2147|AAF49914.2|  334|Drosophila melanogaster CG10657-PA
           protein.
          Length = 334

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 435 ELKEDAKTKDQDLAAIREWLKKQPHL 512
           EL ED   + Q LA  REW++K PH+
Sbjct: 42  ELHEDENIRRQALAQFREWIEKHPHI 67


>AY075483-1|AAL68293.1|  313|Drosophila melanogaster RE39480p
           protein.
          Length = 313

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 411 ELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHL 512
           EL +    EL E     D+D+  +R W+ KQPHL
Sbjct: 15  ELAKKAHDELGEIPDRIDEDIETLRTWISKQPHL 48


>AE014134-1130|AAN10590.1|  313|Drosophila melanogaster CG31636-PA
           protein.
          Length = 313

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 435 ELKEDAKTKDQDLAAIREWLKKQPHL 512
           EL E      QD+ A+R+W+ KQPHL
Sbjct: 18  ELNELPARMAQDIEALRDWVLKQPHL 43


>AE013599-905|AAF58912.1|  313|Drosophila melanogaster CG12926-PA
           protein.
          Length = 313

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 411 ELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHL 512
           EL +    EL E     D+D+  +R W+ KQPHL
Sbjct: 15  ELAKKAHDELGEIPDRIDEDIETLRTWISKQPHL 48


>AY051730-1|AAK93154.1|  550|Drosophila melanogaster LD25919p
           protein.
          Length = 550

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +3

Query: 375 KIKQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQ 503
           ++ +E LE  T E  Q  +  L+ED KTK  +L+ I+E+ +K+
Sbjct: 214 ELNEEELEAETLEALQYKQTMLEEDLKTKKPNLSCIKEFNEKR 256


>AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin subunit
            SMC4 protein.
          Length = 1409

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +3

Query: 375  KIKQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQ 503
            ++ +E LE  T E  Q  +  L+ED KTK  +L+ I+E+ +K+
Sbjct: 1073 ELNEEELEAETLEALQYKQTMLEEDLKTKKPNLSCIKEFNEKR 1115


>AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4
            homolog Gluon protein.
          Length = 1409

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +3

Query: 375  KIKQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQ 503
            ++ +E LE  T E  Q  +  L+ED KTK  +L+ I+E+ +K+
Sbjct: 1073 ELNEEELEAETLEALQYKQTMLEEDLKTKKPNLSCIKEFNEKR 1115


>AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-PA
            protein.
          Length = 1409

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +3

Query: 375  KIKQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQ 503
            ++ +E LE  T E  Q  +  L+ED KTK  +L+ I+E+ +K+
Sbjct: 1073 ELNEEELEAETLEALQYKQTMLEEDLKTKKPNLSCIKEFNEKR 1115


>BT016116-1|AAV37001.1|  875|Drosophila melanogaster LD10035p
           protein.
          Length = 875

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 120 RETFMVYFALIVKFLGTYSEDATIRKTLSVISVFKEMYTST 242
           R+T+ VY  +   F+GT S D   R T + +SV  E ++ T
Sbjct: 398 RDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCT 438


>AF099909-1|AAD13219.1|  875|Drosophila melanogaster topoisomerase
           III protein.
          Length = 875

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 120 RETFMVYFALIVKFLGTYSEDATIRKTLSVISVFKEMYTST 242
           R+T+ VY  +   F+GT S D   R T + +SV  E ++ T
Sbjct: 398 RDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCT 438


>AE014298-867|AAF46144.1|  875|Drosophila melanogaster CG3458-PA
           protein.
          Length = 875

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 120 RETFMVYFALIVKFLGTYSEDATIRKTLSVISVFKEMYTST 242
           R+T+ VY  +   F+GT S D   R T + +SV  E ++ T
Sbjct: 398 RDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCT 438


>AE014296-1011|AAF50745.1|  324|Drosophila melanogaster CG10546-PA
           protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 435 ELKEDAKTKDQDLAAIREWLKKQPHLPDDWENGAADD 545
           EL+ED  T++Q L  +R W+ K     +D +N   DD
Sbjct: 22  ELREDRCTREQSLEQLRNWVAKN----EDLQNVRCDD 54


>AE014297-3364|AAF56166.1|  353|Drosophila melanogaster CG10301-PA
           protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 435 ELKEDAKTKDQDLAAIREWLKKQPHL 512
           E+ E      QD+  +R W+++QPHL
Sbjct: 63  EVNETPDRIQQDIIILRVWIRQQPHL 88


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,327,297
Number of Sequences: 53049
Number of extensions: 451332
Number of successful extensions: 1030
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)