Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f09
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.54 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 500 FLQPFSNSSQVLILGFSILLQLHSYSLPEFT 408
           FLQPFSN+  +L++    ++ L  Y L  F+
Sbjct: 560 FLQPFSNTLWILVMVSVHVVALVLYLLDRFS 590


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 340 YLCHVLFTTIFAFSRQPSASSQCSL 266
           Y+C VL TT++    Q     +C++
Sbjct: 83  YVCRVLHTTVWVAGAQRGNEQRCTV 107


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +3

Query: 453 KTKDQDLAAIREW----LKKQPHLPDDWENGAADDI 548
           + KD ++ A + W     + Q  +PD WE   +D +
Sbjct: 59  QAKDSNVLAAKVWNGQYARVQQSMPDGWETEISDQM 94


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 220 NTEITDNVFLIVA---SSLYVPRNLTINAK*TIKVSRKLNYNKISLGRFN*KKK 68
           NTE+  N F++VA   +++    +L+I+           N+ ++   +++ KK+
Sbjct: 327 NTELNPNTFILVAENNTTMVFCNDLSIDRSTNTMYVLSDNFQQLLFSKYDAKKR 380


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 485 SNSSQVLILGFSILLQLHSYSL 420
           S+S + + L  SIL+ LH + L
Sbjct: 270 SDSGEKVTLSISILISLHVFFL 291


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 485 SNSSQVLILGFSILLQLHSYSL 420
           S+S + + L  SIL+ LH + L
Sbjct: 270 SDSGEKVTLSISILISLHVFFL 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,406
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)