Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f08
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   1.6  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.1  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    26   4.9  

>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 374 YLYENNYQLYSRTTEKDVVH 433
           YLY+N+ ++Y RTT   V+H
Sbjct: 171 YLYKNHLEVYGRTTYNIVLH 190


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 387 IIISCTPEPPKKTWFTLTNIPKSHHHFHWLV 479
           + I C   P    WF  T  P   HH HW+V
Sbjct: 419 LFIGCFLLPISMFWFAWTCYP---HHIHWIV 446


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 383 ENNYQLYSRTTEKDVVHINEYSKVPS 460
           E N  L+ +  EK   +IN Y+K P+
Sbjct: 347 EENRDLFEKVAEKFPFYINAYAKAPN 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,576
Number of Sequences: 5004
Number of extensions: 38687
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)