Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f08
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772...    29   3.8  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    27   8.9  

>06_03_0723 +
           23875008-23875204,23875311-23875576,23877166-23877274,
           23877577-23878212,23878328-23878573,23878669-23878834,
           23878863-23879076,23879580-23880097,23880617-23880683,
           23882131-23882215,23882292-23882367,23882593-23882756,
           23883088-23883217,23883314-23883430,23883505-23883600,
           23883732-23884009,23886571-23886794,23886935-23887011,
           23887103-23887145,23887231-23887288,23888371-23888410,
           23888891-23889418
          Length = 1444

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 157 FSCRSKNI*AQYKGNGYKNVVG 222
           F C SK I A+Y  NGY  V+G
Sbjct: 187 FKCNSKLIGARYFNNGYAKVIG 208


>12_01_0673 -
           5745956-5750346,5750788-5750872,5751018-5751082,
           5751816-5751993
          Length = 1572

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 422 LFRWFWSTTDNYFRIDTAIYKNRNVSS 342
           L RWFW   D     + AIY ++N+ +
Sbjct: 34  LDRWFWKLRDAIEEAEDAIYLHKNIKN 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,169
Number of Sequences: 37544
Number of extensions: 198997
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)