Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f06
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence orphan|Sc...    27   2.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.5  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    26   3.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   3.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   4.3  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    25   9.9  

>SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 400 VSHSEMGSLLLDQAFSLAVQDLNALLFFLDPQDQIRHHFLLLNKTHNTD 254
           +S SE+G    DQ+    V+D+   LF+ + +  +   F++  +  N D
Sbjct: 19  ISDSELGYFCEDQSNIYEVEDMRYYLFYTEEEKNMLPGFIVNARPANLD 67


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 400 VSHSEMGSLLLDQAFSLAVQDLNALLFFLDPQDQIRHHFLLLNKTHNTD 254
           +S SE+G    DQ+    V+D+   LF+ + +  +   F++  +  N D
Sbjct: 696 ISDSELGYFCEDQSNIYEVEDMRYYLFYTEEEKNMLPGFIVNARPANLD 744


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 73  EYIEARLFDGENYLKRDKNVKIYDGDDKTQ 162
           E I+ARL + E   KR + + + DG++K +
Sbjct: 178 EIIKARLQEEEKVAKRKRKLNLSDGENKAK 207


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 303 SWGSKKNNNAFRSCTAREKAWSSSSEPISLCETIIQRWSRYCFLQSF 443
           SW + +N    +  T     +      IS C     +WS+Y FLQ F
Sbjct: 124 SW-TYENIKKMKEQTYHMNIYFDWDREISTCNPDYYKWSQYLFLQMF 169


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +1

Query: 220 DIPKGLVCLSLHLYYVFCLE-EESGGVFGLGGPKR--IIMHLGPALPG 354
           D+PK L C+S H   V  +    +G     G   R  II H   A+PG
Sbjct: 62  DLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPG 109


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 48  II*CNGQI*VYRGKIIRWRKLFKTRQKC*NLR 143
           +I C+GQI V  GK+I      +TRQ   NL+
Sbjct: 62  VIYCSGQIPVANGKVIEGTVGDQTRQCLLNLQ 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,525
Number of Sequences: 5004
Number of extensions: 53601
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)