Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f05
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   2.5  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   10.0 
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   10.0 
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   10.0 

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 175 IRLAFI*LHHDAFICILISNNKIMWLNCVL 86
           I+ AF   H DA IC+++S   ++WL C++
Sbjct: 180 IQKAFPLFHKDAIICMMLS---VIWLFCLV 206


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 362 VRLVYDQTRELEHGSSQLADCPLSVHQN 445
           V+ + D  R LE+ S+    CPLS H N
Sbjct: 501 VKQINDFYRRLENKSAFYMVCPLSAHNN 528


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 288 PYHSDNKVHNYLPRFELTIRIIFY 217
           P  S + V++YLP F L  +I +Y
Sbjct: 873 PKLSSSNVYDYLPAFRLLTKIEYY 896


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +3

Query: 516 NLGMPEQYRIRQFVLEWHEG-----LWRDDYHIKVNTS 614
           N+G PE+ RI  +VL+ H G     L RD  H+   TS
Sbjct: 111 NIGQPERSRIENYVLK-HGGTFCPDLTRDVTHLIAGTS 147


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -1

Query: 652 VPWGTSVCQK-PLCEVLTL 599
           +PW TSVC K P C+   L
Sbjct: 217 IPWYTSVCSKLPNCDTFLL 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,875
Number of Sequences: 5004
Number of extensions: 49289
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)