Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f05
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-11|AAU20827.1|  313|Caenorhabditis elegans Hypothetical p...    30   1.7  
U00047-10|AAA50686.1|  471|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p...    29   2.3  
AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U00047-11|AAU20827.1|  313|Caenorhabditis elegans Hypothetical
           protein ZK418.2b protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 424 TVGQLTRAVLKFARLIIHEPHVIPDKHSLFDELIGIEKIP 305
           T+G+    +  +  L + E HV+P+ + + D++   EK+P
Sbjct: 67  TIGKEYFEIGNYVNLNLKEAHVVPNSYKILDKIFTGEKVP 106


>U00047-10|AAA50686.1|  471|Caenorhabditis elegans Hypothetical
           protein ZK418.2a protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 424 TVGQLTRAVLKFARLIIHEPHVIPDKHSLFDELIGIEKIP 305
           T+G+    +  +  L + E HV+P+ + + D++   EK+P
Sbjct: 225 TIGKEYFEIGNYVNLNLKEAHVVPNSYKILDKIFTGEKVP 264


>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
           protein T05F1.6 protein.
          Length = 1165

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 374 YDQTRELEHGSSQLADCPLSVHQNSNYAYSTDAVSQSDKYSVHEPAVQLRYA 529
           YD   E+EH    L +  + VH      Y+    S+S KYS+ E A + R A
Sbjct: 571 YDLDTEMEHHPEPLKNIHMEVHNFGAVKYAKLGNSES-KYSMTEKAAESRIA 621


>AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical
           protein F56F11.4a protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 424 TVGQLTRAVLKFARLIIHEPHVIPDKHSLFDELIGIEKIPDDT 296
           T+   TR  L+     IHE  V+P K      L+ +EK+PD T
Sbjct: 112 TLAAGTRVALRADNYAIHE--VLPSKVDPLVSLMMVEKVPDST 152


>AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical
           protein F56F11.4b protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 424 TVGQLTRAVLKFARLIIHEPHVIPDKHSLFDELIGIEKIPDDT 296
           T+   TR  L+     IHE  V+P K      L+ +EK+PD T
Sbjct: 133 TLAAGTRVALRADNYAIHE--VLPSKVDPLVSLMMVEKVPDST 173


>Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical
           protein C31E10.6 protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 561 PKRTVESDIAQAYLSCTAGSCTEYLSDW 478
           PK   E D   AY+  T+ +C  +LSDW
Sbjct: 476 PKERTEYDYRVAYIGYTSDACM-FLSDW 502


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 356 NDVRLVYDQTRELEHGSSQLADCPLSVHQNSNYAYSTDAVSQSDKYSVHE 505
           N + +  + T   E    ++AD P S   +++ +Y TD +   D  S HE
Sbjct: 515 NYLEMEQEDTSNSEEDQLEIADSPSSTISSAHGSYDTDLIDIEDS-SAHE 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,261,207
Number of Sequences: 27780
Number of extensions: 273934
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)