Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f05
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.66 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.66 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 561 PKRTVESDIAQAYLSCTAGSCTEYLSDWDTA 469
           P R   S+ + A+L CTA        DW TA
Sbjct: 37  PSRVEFSNSSGAWLDCTATGSPPLNIDWSTA 67



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 226 HFLFYYKDKKYVVGT 182
           HF+ +YKD + + GT
Sbjct: 363 HFITWYKDGRQLPGT 377


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 561 PKRTVESDIAQAYLSCTAGSCTEYLSDWDTA 469
           P R   S+ + A+L CTA        DW TA
Sbjct: 37  PSRVEFSNSSGAWLDCTATGSPPLNIDWSTA 67



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 226 HFLFYYKDKKYVVGT 182
           HF+ +YKD + + GT
Sbjct: 363 HFITWYKDGRQLPGT 377


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 386 RELEHGSSQLADCPLSVHQNSNYAYSTD 469
           +E  + SS   + P S+HQ ++++ +TD
Sbjct: 102 KEFPNSSSSDDERPNSIHQRASFSLNTD 129


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 229 NHFLFYYKDKKYVVGTKI 176
           NH+L+ YKDK  +   K+
Sbjct: 140 NHYLWLYKDKTILYMVKL 157


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 397 ARLESTGRLSTFCPPE 444
           A  +S+GR+ T C PE
Sbjct: 25  AAQDSSGRIFTICVPE 40


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 397 ARLESTGRLSTFCPPE 444
           A  +S+GR+ T C PE
Sbjct: 25  AAQDSSGRIFTICVPE 40


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 397 ARLESTGRLSTFCPPE 444
           A  +S+GR+ T C PE
Sbjct: 25  AAQDSSGRIFTICVPE 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,622
Number of Sequences: 438
Number of extensions: 3279
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)