Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f04
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   1.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.9  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   3.9  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   3.9  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.2  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   6.8  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    25   9.0  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 256  LCTQRTETVLRFLSIKIYFMKIVRQDLLFPHSNPSSEFL 140
            L T   +   ++L ++ YF +++ + LL  + +PSSE L
Sbjct: 1001 LSTPNVQADEKYLKLRCYFSQLLEKVLLVQNLHPSSEVL 1039


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
 Frame = -1

Query: 293 FSCRSVISFTTCFMHTKDRNSVKVSFD---*DLFYE--NC 189
           F   S+++F  CF+HT +  S K++F+    ++FYE  NC
Sbjct: 788 FEINSILNFFFCFLHTVE-PSGKLTFELAFLEIFYELFNC 826


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 503 INYMSSLYFDRYFRIYRLTYVIVLFCFK*ELVFVVCVINKC 625
           +N +S+ + DR  R Y   ++IVL      +V ++C++ KC
Sbjct: 203 VNSLSTRWLDRITRFYATFHLIVL------VVCMICLLAKC 237


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   SRSFPAEMQFQKQYNCEKI*YLFYRNVKYL 91
           S SFPA ++     + E   Y FYR+  Y+
Sbjct: 278 STSFPASLEMNVDIDLEPSGYFFYRHNNYI 307


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 8   SFPAEMQFQKQYNCEKI*YLFYRNVKYL 91
           SF   M F + Y  EK+ YL   +++YL
Sbjct: 190 SFSYHMSFLQNYPIEKLNYLLQSSIEYL 217


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 129 LQHWRNSELGLECGNNKSCRTIFIK*ILIERNLNTVSVL 245
           +QH RNS+  L+C    + +T +I  +L   NL  + ++
Sbjct: 119 VQHRRNSQNKLKCAMEVNIKTNYIVILLTSINLKKLKMI 157


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 NTSENTTPSLWLGFESSLATLNSGNIVYVKCY 415
           N  E+ T S+W+ F  SL  + S  I   +CY
Sbjct: 6   NAEEDVT-SMWVKFHESLNPIRSSLIKQEECY 36


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 199 MKIVRQDLLFPHSNPSSEFLQCCSC 125
           +K V++ +L PH +P  E+L+   C
Sbjct: 94  LKQVKRTVLLPHRSPIHEYLKLIVC 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,850
Number of Sequences: 5004
Number of extensions: 54019
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)