Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f04
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840...    30   1.7  

>07_03_0602 +
           19881998-19882217,19882303-19882496,19883719-19884039,
           19885016-19885244,19885554-19885653,19886413-19886539,
           19886603-19886780,19886859-19886917,19887082-19887568,
           19887682-19887836,19887930-19888100,19888181-19888270,
           19888714-19888872,19888940-19889223,19889435-19889498
          Length = 945

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 90  CFFFNLAAGCFKQLQHWRNSELGLECGNNKSCRT 191
           C F NLAA C K L+H R  +       N+S R+
Sbjct: 406 CSFSNLAANCVKHLKHSRQDQENSSAQANESDRS 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,134
Number of Sequences: 37544
Number of extensions: 287245
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)