Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f04
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family...    29   2.1  
Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family
           protein 1 protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 36  SNTTVKKFNIYFIAT*NICFFFNLAAGC 119
           SN TVKK  IY I   +IC F   +  C
Sbjct: 236 SNKTVKKLKIYIIQVADICLFTTASYSC 263


>Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical
           protein T05G5.8 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 193 IVRQDLLFPHSNPSSEFLQCC 131
           ++R+++ +P   P  +FL CC
Sbjct: 474 LIREEIAYPRLTPDQQFLVCC 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,459
Number of Sequences: 27780
Number of extensions: 297213
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)