Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23f02
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 31 0.14
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 30 0.25
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 27 1.8
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 27 1.8
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 2.3
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 7.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.1
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ... 25 9.4
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 25 9.4
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 9.4
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 9.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.4
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 517 RSLHDLRRKLKRECFLPCSRNPISIQPKNTVLRCQKLLLKISSRMYVH-TRTIRPIEQ 347
RS D++++ R F P + +P+S + + + C +LL + Y H + TIRPI Q
Sbjct: 1475 RSNLDIQKEAARN-FFPSTESPVSNRRQRIAVDCFSILLDDYNSSYEHVSLTIRPILQ 1531
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 139 FNTVIDGCAKGQNKSDDVTCKKFVLSAIKYHNDRKSDNGDVCLMGKYHNLLYIAIKLAFD 318
F V D C+ S + C KF+ I + S D C++ +N+L+ +
Sbjct: 481 FKLVEDACSVADENSAPILCSKFLFPVI----ESFSKESDDCVVSPVYNMLFFLSVNFQN 536
Query: 319 WGLKD 333
GLKD
Sbjct: 537 PGLKD 541
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 479 MFSSLFEKSD-FHPAKKYGAEVPKIAPKNILSNVRSHAYNSSNRAATVPLSF 327
MF SL KS F P K G + P + + S+A + A VP+ F
Sbjct: 1 MFKSLVRKSSAFQPLKYGGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEF 52
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 331 DNGTVAALLDELYACERTFERIFLGAIFGTSAPYFLAG-WK 450
D+ +AAL+ + C TF IF+ FG +P + G W+
Sbjct: 268 DSPYLAALIPDAVNCGCTFGAIFVLEFFGRRSPLIVGGIWQ 308
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 253 GDVCLMGKYHNLLYIAIKLAFDWGLKDNGTVAALLDELYACERTFERIFLGAIFGT 420
G V L+ HN LY AIK+ + D + DE Y R + F+ ++GT
Sbjct: 213 GRVHLVQSNHNRLYYAIKVLEKKKIVDMKQIEHTCDERYILSRV-QHPFITILWGT 267
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +1
Query: 130 VEYFNTVIDGCAKGQNKSDDVTCKKFVLSAIKYHNDRK 243
V F T IDG K SD+ C F L IK +DRK
Sbjct: 21 VNDFMTWIDGMKK---TSDENGCSPFTLKPIKSTSDRK 55
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 34 LQMDAFMELYFEEVFENLDRDALISRIKRKEL 129
+ MDAF+E FEE+ DA SR KRK L
Sbjct: 69 MSMDAFLEGGFEELDSANSNDAGSSR-KRKNL 99
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -3
Query: 209 TNFLHVTSSDLFCPLAQPSITVLKYSTSSFLLILLIKASRSKFSKTSSKYNSMNAS 42
T+ +++SS + + PS + TSS L I ++ S S TSS +S ++S
Sbjct: 205 TSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSS 260
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +1
Query: 28 NLLQMDAFMELYFEEVFENLDRDALISRIKRKELVEYFNTVIDGCAKGQNKSDDVTC 198
N+ MD F + + + + N + + +S K + V +FN + ++K D+ C
Sbjct: 570 NVRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRFEYEKESKRSDIVC 626
>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 368 YNSSNRAATVPLSFRPQSKANFIAIYRRL 282
YN T +S+R +KANF A YR L
Sbjct: 38 YNLPTVPTTSHVSYRQIAKANFFAGYRPL 66
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 596 GEALPQLSKGTSMKRYFLLSSVYSKQAF 513
GE L + T ++RY LLS + + AF
Sbjct: 63 GEVPTDLEQATGLERYELLSELSGRDAF 90
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -1
Query: 259 HHRCQISDRCGTLSLTEQTFYMLHRLTC--FVL 167
H C + LT+Q F++ RLTC FVL
Sbjct: 116 HSICSFRTERLQIQLTDQRFHIFSRLTCAYFVL 148
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 397 FLGAIFGTSAPYFLAGWKSDFSN 465
FL F +S + L+ WK+DF N
Sbjct: 231 FLENFFSSSRLHHLSTWKADFKN 253
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 9.4
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Frame = +1
Query: 16 TKIINLLQMDAFMELYFEEV-----FENLDRDALISRIK-RKELVEYFNTVIDGCAKGQN 177
TKI LLQ+DAF + + +E++ D +++ + ++L ++ +
Sbjct: 23 TKIDPLLQVDAFTSILIPLISKSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDL 82
Query: 178 KSDDVTCKKFVLSAIKYHNDRKSDNGDVCLMG-KYHNLLYIAIKLAFDWGLKDNGTVAAL 354
D+ + LS IK + KS + D L + A+K A D LK + L
Sbjct: 83 LEDERKLLENELSQIKEYLREKSSSYDTVLHDCSSLKSVNEALKQAQDQNLKQTAQLQNL 142
Query: 355 LDE 363
L +
Sbjct: 143 LSD 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,012
Number of Sequences: 5004
Number of extensions: 60609
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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