Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f01
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.54 
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.2  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    28   1.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.2  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    27   1.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.9  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   8.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.8  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   8.8  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +3

Query: 360 VKSNNHLVNVSKDVLILLCFLIANFIV 440
           ++S+ + +++ KDVLI+LC L  NFI+
Sbjct: 594 LRSSRNTLDLHKDVLIVLCQLSQNFIL 620


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 452 NYHQNNEIRNEETQ*DQHVFGN 387
           N+H N+ +RNE+TQ   H+  N
Sbjct: 93  NHHDNSVLRNEDTQLQPHIVCN 114


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 255 QKVIVHRCNIFTRTAENIYDKCASYNL 335
           + + VHR ++ T    NI+  CA Y+L
Sbjct: 136 ESIFVHRFSLATMPLRNIFKNCAHYHL 162


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 165  ANDKCSLKASLDIQ-NRGPNRIVELNEAKCKQKVIVHRCNIFTRTAENIYDKCASYNLRY 341
            A+ K SLK   ++Q N+  +R + L   K KQ +     ++       I D C S NLRY
Sbjct: 1260 ADQKLSLKGKQNVQSNKSVDRDM-LKGTKDKQWIEGVSASLMQHFLPCILDSCFSKNLRY 1318

Query: 342  CPFG 353
               G
Sbjct: 1319 SMLG 1322


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = +3

Query: 270 HRCNIFTRTAENIYDKCASYNLRYCPFGRFVKSNNHLVNVSKDVLILLCFLIANFIVLMI 449
           H C +F    EN+     SY  R  P G  VK   + + ++ D L   C +I   +    
Sbjct: 161 HVCMVFEVLGENLLSLIQSYGHRGVPVG-IVKQIAYQLLIALDYLHRECGIIHTDLKPEN 219

Query: 450 IIFNISCDVYFGIKQAATRRRSTS 521
           ++  I  D    I+  AT    TS
Sbjct: 220 VLICIDQDALQHIEAPATTSSPTS 243


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 335  KILPLWPFCQVQQSFGQRFQRRVDLIVFPHCEFHCFD 445
            KI  + P+    Q    +FQR+   I+F H + H  D
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVD 1706


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 201 IQNRGPNRIVELNEAKCKQKVIVHRCNIFTRTAENIYDKCASYNL 335
           I+     R  +L    CK+ ++ +  + F R   N+ +KC   +L
Sbjct: 381 IEQNATERSEDLLLKFCKETIVPYYSSKFPRITRNLLEKCNGLDL 425


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 235 SSTIRFGPRFCMSKDAFK 182
           + T   GPR C+S+D FK
Sbjct: 54  NETTSTGPRICISRDEFK 71


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 144 YKAFFLVSPLLEYISKVVGEILLFI 70
           +K F+L++ ++EY  K++    LF+
Sbjct: 98  FKRFYLINSVMEYSPKIISFTSLFL 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,059
Number of Sequences: 5004
Number of extensions: 48160
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)