Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f01
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265...    33   0.24 
12_02_0454 + 19199063-19200757,19202201-19202287                       31   0.97 
08_02_1180 + 24980042-24980784,24980874-24981168,24981650-249818...    27   9.0  

>05_01_0335 +
           2652334-2652340,2652459-2652550,2652642-2653362,
           2653456-2653533,2653658-2653684,2653871-2653938,
           2654089-2654174,2654251-2654333,2654478-2654620,
           2654709-2654810,2654906-2655199,2655282-2655404,
           2655733-2656119
          Length = 736

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 20/97 (20%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = +3

Query: 195 LDIQNRGPNRIVELNEAKCKQKVIVHRCNIFTRTAENIYDKCASYNLRYCPFGRFVKSNN 374
           LD+  +    I+ +    C Q+ + ++      +    +DK   ++L+YC +  F + +N
Sbjct: 561 LDLSGKQDREIIRVIVDCCLQEKMFNKYYAVLASKLCSHDKNHKFSLQYCIWDHFKELDN 620

Query: 375 HLVNVSKDVLILLCFLIANF---IVLMIIIFNISCDV 476
             +N S ++  L+  ++ANF   +  + ++ N++ +V
Sbjct: 621 MELNRSMNLAKLVAEMLANFTLSLATLKVVKNLAVEV 657


>12_02_0454 + 19199063-19200757,19202201-19202287
          Length = 593

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -3

Query: 476 DIAADIKDNYHQNNEIRNEETQ*DQHVFGNVDQMIVGLDKTA 351
           D A ++ D   +  E+R+EE + D+H+ GN +Q +   D+T+
Sbjct: 382 DAAEELADELSEGLEVRDEEEKGDKHL-GNGEQKVGSYDETS 422


>08_02_1180 +
           24980042-24980784,24980874-24981168,24981650-24981823,
           24981999-24982187,24982290-24982403,24982517-24982837,
           24983485-24983542,24984216-24984337
          Length = 671

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 123 TREKMP--CKCTGIKGANDKCSLKASLDIQNRGPNRIVELNEAK 248
           TRE  P   K +G +   +K   KAS +IQ+R P     +N AK
Sbjct: 36  TRENSPRMAKSSGSRQVQNKLQHKASNNIQSRSPKPRKVVNAAK 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,606
Number of Sequences: 37544
Number of extensions: 264917
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)